(Q52659405)

English

Global mRNA stability is not associated with levels of gene expression in Drosophila melanogaster but shows a negative correlation with codon bias.

scientific article published on 21 July 2005

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

5 May 2018

http://europepmc.org/abstract/MED/16044249

Global mRNA stability is not associated with levels of gene expression in Drosophila melanogaster but shows a negative correlation with codon bias. (English)

1 reference

Europe PubMed Central

PubMed publication ID

5 May 2018

http://europepmc.org/abstract/MED/16044249

Drosophila melanogaster

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1 reference

based on heuristic

author name string

Hans K Stenøien

1

1 reference

Europe PubMed Central

PubMed publication ID

5 May 2018

http://europepmc.org/abstract/MED/16044249

Wolfgang Stephan

2

1 reference

Europe PubMed Central

PubMed publication ID

5 May 2018

http://europepmc.org/abstract/MED/16044249

publication date

21 July 2005

1 reference

Europe PubMed Central

PubMed publication ID

5 May 2018

http://europepmc.org/abstract/MED/16044249

Journal of Molecular Evolution

1 reference

Europe PubMed Central

PubMed publication ID

5 May 2018

http://europepmc.org/abstract/MED/16044249

61

1 reference

Europe PubMed Central

PubMed publication ID

5 May 2018

http://europepmc.org/abstract/MED/16044249

3

1 reference

Europe PubMed Central

PubMed publication ID

5 May 2018

http://europepmc.org/abstract/MED/16044249

306-314

1 reference

Europe PubMed Central

PubMed publication ID

5 May 2018

http://europepmc.org/abstract/MED/16044249

https://scigraph.springernature.com/pub.10.1007/s00239-004-0271-9

0 references

Codon usage: mutational bias, translational selection, or both?

1 reference

https://api.crossref.org/works/10.1007%2FS00239-004-0271-9

21 January 2018

Translational selection and molecular evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

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Regulation of mRNA stability in mammalian cells

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https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

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Mutation rates differ among regions of the mammalian genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

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inferred from PubMed ID database lookup

Codon bias evolution in Drosophila. Population genetics of mutation-selection drift

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy.

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https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

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DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

dbEST--database for "expressed sequence tags"

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

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Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

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Messenger RNA stability and its role in control of gene expression in bacteria and phages

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

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Synonymous codon usage, accuracy of translation, and gene length in Caenorhabditis elegans.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Widespread selection for local RNA secondary structure in coding regions of bacterial genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Codon usage in Caenorhabditis elegans: delineation of translational selection and mutational biases

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Translational selection and yeast proteome evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

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The selection-mutation-drift theory of synonymous codon usage

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

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DNA sequence evolution: the sounds of silence

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

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A comparison of thermodynamic foldings with comparatively derived structures of 16S and 16S-like rRNAs.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mechanisms of gene silencing by double-stranded RNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

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Comparative DNA analysis across diverse genomes.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

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Population, evolutionary and genomic consequences of interference selection

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice that is optimal for the E. coli translational system

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mammalian mutation pressure, synonymous codon choice, and mRNA degradation

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Codon usage bias and tRNA abundance in Drosophila

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene expression and molecular evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Isochores result from mutation not selection

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Codon usage and tRNA genes in eukaryotes: correlation of codon usage diversity with translation efficiency and with CG-dinucleotide usage as assessed by multivariate analysis.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ACNUC--a portable retrieval system for nucleic acid sequence databases: logical and physical designs and usage.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A test of translational selection at 'silent' sites in the human genome: base composition comparisons in alternatively spliced genes.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

EMBOSS: the European Molecular Biology Open Software Suite

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Adaptive basis of codon usage in the haploid moss Physcomitrella patens

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The extent of codon usage bias in human RNA viruses and its evolutionary origin

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

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Reduced natural selection associated with low recombination in Drosophila melanogaster.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Translational selection on codon usage in Xenopus laevis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetic factors that regulate the attenuation of the general stress response of yeast

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Basic local alignment search tool

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Natural selection on synonymous sites is correlated with gene length and recombination in Drosophila.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-scale compositional comparisons in eukaryotes

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

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The relationship between third-codon position nucleotide content, codon bias, mRNA secondary structure and gene expression in the drosophilid alcohol dehydrogenase genes Adh and Adhr

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Synonymous codon usage in Zea mays L. nuclear genes is varied by levels of C and G-ending codons.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Codon usage in bacteria: correlation with gene expressivity

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Translation initiation AUG context varies with codon usage bias and gene length in Drosophila melanogaster.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The heat shock response

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

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Dynamic interplay between antagonistic pathways controlling the sigma 32 level in Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Microarray and EST database estimates of mRNA expression levels differ: the protein length versus expression curve for C. elegans

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Selective and mutational patterns associated with gene expression in humans: influences on synonymous composition and intron presence

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Relationship of codon bias to mRNA concentration and protein length in Saccharomyces cerevisiae

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Codon preferences in free-living microorganisms

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

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Death by decapitation for mRNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification and prevention of a GC content bias in SAGE libraries

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The nonrandom location of synonymous codons suggests that reading frame-independent forces have patterned codon preferences

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

On the normalization of RNA equilibrium free energy to the length of the sequence

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The mosaic genome of warm-blooded vertebrates

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

tRNA gene number and codon usage in the C. elegans genome are co-adapted for optimal translation of highly expressed genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The effects of mutation and natural selection on codon bias in the genes of Drosophila

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

"Silent" sites in Drosophila genes are not neutral: evidence of selection among synonymous codons

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Models of nearly neutral mutations with particular implications for nonrandom usage of synonymous codons.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Codon usage and genome evolution.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Codon usage and gene function are related in sequences of Arabidopsis thaliana

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Interactions between natural selection, recombination and gene density in the genes of Drosophila.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Codon usage and tRNA content in unicellular and multicellular organisms

1 reference

https://pubmed.ncbi.nlm.nih.gov/16044249

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S00239-004-0271-9

1 reference

Europe PubMed Central

PubMed publication ID

5 May 2018

http://europepmc.org/abstract/MED/16044249

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

5 May 2018

http://europepmc.org/abstract/MED/16044249

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