(Q43057818)

13 November 2017

A novel approach to structural alignment using realistic structural and environmental information (English)

1 reference

13 November 2017

Yu Chen

1

1 reference

PMC publication ID

2253243

13 November 2017

Gordon M Crippen

series ordinal

2

1 reference

13 November 2017

31 October 2005

1 reference

13 November 2017

1 reference

13 November 2017

14

1 reference

13 November 2017

12

1 reference

13 November 2017

2935-2946

1 reference

Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures.

13 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253243

Database searching by flexible protein structure alignment.

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253243

Sensitivity and selectivity in protein structure comparison

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253243

FoldMiner: structural motif discovery using an improved superposition algorithm.

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253243

Analysis of protein sequence/structure similarity relationships

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253243

In search for more accurate alignments in the twilight zone

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253243

FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253243

An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments.

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253243

26 May 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253243

Protein structure comparison using iterated double dynamic programming

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253243

Protein structure alignment by incremental combinatorial extension (CE) of the optimal path

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253243

A unified statistical framework for sequence comparison and structure comparison

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253243

CATH--a hierarchic classification of protein domain structures

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253243

A 3D-1D substitution matrix for protein fold recognition that includes predicted secondary structure of the sequence

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253243

Comparison of protein structures using 3D profile alignment

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253243

MOLMOL: a program for display and analysis of macromolecular structures

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253243

Protein structure comparison by alignment of distance matrices

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253243

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253243

The interpretation of protein structures: Estimation of static accessibility

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253243

A general method applicable to the search for similarities in the amino acid sequence of two proteins

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253243

Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253243

Definition of general topological equivalence in protein structures. A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253243

A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253243

Use of receiver operating characteristic (ROC) analysis to evaluate sequence matching

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253243

Size-independent comparison of protein three-dimensional structures

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2253243

Structural genomics programs at the US National Institute of General Medical Sciences

15 August 2018

1 reference

12 December 2020

On the role of structural information in remote homology detection and sequence alignment: new methods using hybrid sequence profiles

1 reference

12 December 2020

A nonlinear measure of subalignment similarity and its significance levels

1 reference

12 December 2020

Assessing the performance of fold recognition methods by means of a comprehensive benchmark

1 reference

12 December 2020

Identifiers

DOI

10.1110/PS.051428205

1 reference

13 November 2017

1 reference

PMC publication ID

2253243

13 November 2017

PubMed publication ID

16260755

1 reference

PMC publication ID

2253243