(Q43113788)

English

Dynamics of a benzo[a]pyrene-derived guanine DNA lesion in TGT and CGC sequence contexts: enhanced mobility in TGT explains conformational heterogeneity, flexible bending, and greater susceptibility to nucleotide excision repair

scientific article published on 19 September 2007

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

Dynamics of a benzo[a]pyrene-derived guanine DNA lesion in TGT and CGC sequence contexts: enhanced mobility in TGT explains conformational heterogeneity, flexible bending, and greater susceptibility to nucleotide excision repair (English)

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

4

object named as

Suse Broyde

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

author name string

Yuqin Cai

1

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

Dinshaw J Patel

2

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

Nicholas E Geacintov

3

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

language of work or name

0 references

publication date

19 September 2007

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

Journal of Molecular Biology

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

374

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

2

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

292-305

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

Recognition of DNA damage by the Rad4 nucleotide excision repair protein

1 reference

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The human DNA repair factor XPC-HR23B distinguishes stereoisomeric benzo[a]pyrenyl-DNA lesions

1 reference

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Conformational differences of the C8-deoxyguanosine adduct of 2-amino-3-methylimidazo[4,5-f]quinoline (IQ) within the NarI recognition sequence

1 reference

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25 May 2018

Exocyclic amino groups of flanking guanines govern sequence-dependent adduct conformations and local structural distortions for minor groove-aligned benzo[a]pyrenyl-guanine lesions in a GG mutation hotspot context

1 reference

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25 May 2018

Robust incision of Benoz[a]pyrene-7,8-dihyrodiol-9,10-epoxide-DNA adducts by a recombinant thermoresistant interspecies combination UvrABC endonuclease system

1 reference

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25 May 2018

Poor base stacking at DNA lesions may initiate recognition by many repair proteins

1 reference

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NMR structures of damaged DNA.

1 reference

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25 May 2018

Molecular mechanisms of mammalian global genome nucleotide excision repair.

1 reference

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Dynamic conformational heterogeneities of carcinogen-DNA adducts and their mutagenic relevance

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Mechanisms of DNA damage recognition and strand discrimination in human nucleotide excision repair

1 reference

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A model for initial DNA lesion recognition by NER and MMR based on local conformational flexibility

1 reference

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25 May 2018

Ordered conformational changes in damaged DNA induced by nucleotide excision repair factors

1 reference

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Effects of DNA Adduct Structure and Sequence Context on Strand Opening of Repair Intermediates and Incision by UvrABC Nuclease

1 reference

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25 May 2018

The comings and goings of nucleotide excision repair factors on damaged DNA

1 reference

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25 May 2018

Critical DNA damage recognition functions of XPC-hHR23B and XPA-RPA in nucleotide excision repair

1 reference

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25 May 2018

3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures

1 reference

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1 reference

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25 May 2018

Simulating structural and thermodynamic properties of carcinogen-damaged DNA.

1 reference

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25 May 2018

Base pair opening within B-DNA: free energy pathways for GC and AT pairs from umbrella sampling simulations

1 reference

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25 May 2018

A molecular mechanism for DNA damage recognition by the xeroderma pigmentosum group C protein complex

1 reference

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25 May 2018

Thermodynamic and structural factors in the removal of bulky DNA adducts by the nucleotide excision repair machinery

1 reference

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25 May 2018

Relating repair susceptibility of carcinogen-damaged DNA with structural distortion and thermodynamic stability

1 reference

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25 May 2018

A multistep damage recognition mechanism for global genomic nucleotide excision repair

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Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models

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Characterization of DNA recognition by the human UV-damaged DNA-binding protein

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25 May 2018

DNA damage recognition during nucleotide excision repair in mammalian cells

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DNA sequence-dependent deformability deduced from protein-DNA crystal complexes

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Xeroderma pigmentosum group C protein complex is the initiator of global genome nucleotide excision repair

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DNA adduct formation by polycyclic aromatic hydrocarbon dihydrodiol epoxides

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Base pair conformation-dependent excision of benzo[a]pyrene diol epoxide-guanine adducts by human nucleotide excision repair enzymes

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Two human homologs of Rad23 are functionally interchangeable in complex formation and stimulation of XPC repair activity

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Mechanism of open complex and dual incision formation by human nucleotide excision repair factors

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NMR solution structures of stereoisometric covalent polycyclic aromatic carcinogen-DNA adduct: principles, patterns, and diversity

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1 reference

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Base flipping in nucleotide excision repair

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A modified version of the Cornell et al. force field with improved sugar pucker phases and helical repeat

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https://pubmed.ncbi.nlm.nih.gov/17942115

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Prediction of DNA structure from sequence: a build-up technique

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https://pubmed.ncbi.nlm.nih.gov/17942115

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Improved nearest-neighbor parameters for predicting DNA duplex stability

1 reference

https://pubmed.ncbi.nlm.nih.gov/17942115

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B-DNA twisting correlates with base-pair morphology.

1 reference

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Rate of incision of N-acetyl-2-aminofluorene and N-2-aminofluorene adducts by UvrABC nuclease is adduct- and sequence-specific: comparison of the rates of UvrABC nuclease incision and protein-DNA complex formation

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Nuclear magnetic resonance solution structures of covalent aromatic amine-DNA adducts and their mutagenic relevance

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Sequence dependence and characteristics of bends induced by site-specific polynuclear aromatic carcinogen-deoxyguanosine lesions in oligonucleotides

1 reference

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Structural basis for DNA recognition and processing by UvrB

1 reference

https://pubmed.ncbi.nlm.nih.gov/17942115

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Solution conformation of the (-)-cis-anti-benzo[a]pyrenyl-dG adduct opposite dC in a DNA duplex: intercalation of the covalently attached BP ring into the helix with base displacement of the modified deoxyguanosine into the major groove

1 reference

https://pubmed.ncbi.nlm.nih.gov/17942115

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DNA quality control by conformational readout on the undamaged strand of the double helix

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Identifiers

10.1016/J.JMB.2007.09.034

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

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