(Q43150690)

English

Pairwise statistical significance of local sequence alignment using multiple parameter sets and empirical justification of parameter set change penalty

scientific article published on 19 March 2009

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Statements

scholarly article

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

Pairwise statistical significance of local sequence alignment using multiple parameter sets and empirical justification of parameter set change penalty (English)

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

0 references

sequence alignment

1 reference

based on heuristic

inferred from title

author name string

Ankit Agrawal

1

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

Xiaoqiu Huang

2

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

publication date

19 March 2009

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

BMC Bioinformatics

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

10 Suppl 3

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

S1

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

copyright license

Creative Commons Attribution 2.0 Generic

1 March 2009

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

https://scigraph.springernature.com/pub.10.1186/1471-2105-10-s3-s1

0 references

Pairwise statistical significance and empirical determination of effective gap opening penalties for protein local sequence alignment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665049

25 May 2018

Local sequence alignments statistics: deviations from Gumbel statistics in the rare-event tail

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665049

25 May 2018

Retrieval accuracy, statistical significance and compositional similarity in protein sequence database searches

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665049

25 May 2018

Statistical significance in biological sequence analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665049

25 May 2018

The Gumbel pre-factor k for gapped local alignment can be estimated from simulations of global alignment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665049

25 May 2018

Sensitivity and selectivity in protein structure comparison

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665049

25 May 2018

Sampling rare events: Statistics of local sequence alignments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665049

25 May 2018

Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665049

25 May 2018

The estimation of statistical parameters for local alignment score distributions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665049

25 May 2018

Rapid assessment of extremal statistics for gapped local alignment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665049

25 May 2018

Flexible sequence similarity searching with the FASTA3 program package

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665049

25 May 2018

Empirical statistical estimates for sequence similarity searches.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665049

25 May 2018

CATH--a hierarchic classification of protein domain structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665049

25 May 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665049

25 May 2018

A sequence similarity search algorithm based on a probabilistic interpretation of an alignment scoring system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665049

25 May 2018

Local alignment statistics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665049

25 May 2018

Effective protein sequence comparison

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665049

25 May 2018

Rapid and accurate estimates of statistical significance for sequence data base searches

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665049

25 May 2018

Issues in searching molecular sequence databases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665049

25 May 2018

Identification of common molecular subsequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665049

25 May 2018

Improved tools for biological sequence comparison

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665049

25 May 2018

Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665049

25 May 2018

Basic local alignment search tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665049

25 May 2018

Maximum-likelihood estimation of the statistical distribution of Smith-Waterman local sequence similarity scores

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665049

15 August 2018

Dynamic use of multiple parameter sets in sequence alignment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665049

15 August 2018

Toward an accurate statistics of gapped alignments.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665049

15 August 2018

A generalized global alignment algorithm.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665049

15 August 2018

Accurate formula for P-values of gapped local sequence and profile alignments

1 reference

https://pubmed.ncbi.nlm.nih.gov/19344477

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Making sense of score statistics for sequence alignments

1 reference

https://pubmed.ncbi.nlm.nih.gov/19344477

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Approximate statistics of gapped alignments

1 reference

https://pubmed.ncbi.nlm.nih.gov/19344477

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2105-10-S3-S1

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

DBLP publication ID

journals/bmcbi/AgrawalH09

1 reference

DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

ResearchGate publication ID

0 references

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