(Q43422131)

English

Orchestration of thiamin biosynthesis and central metabolism by combined action of the thiamin pyrophosphate riboswitch and the circadian clock in Arabidopsis

scientific article published on 22 January 2013

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scholarly article

1 reference

Europe PubMed Central

23 November 2017

Orchestration of thiamin biosynthesis and central metabolism by combined action of the thiamin pyrophosphate riboswitch and the circadian clock in Arabidopsis (English)

1 reference

Europe PubMed Central

23 November 2017

circadian rhythm

0 references

Adriano Nunes Nesi

4

object named as

Adriano Nunes-Nesi

1 reference

Europe PubMed Central

23 November 2017

Alisdair R Fernie

7

object named as

Alisdair R Fernie

1 reference

Europe PubMed Central

23 November 2017

Wagner L Araújo

3

object named as

Wagner L Araújo

1 reference

Europe PubMed Central

23 November 2017

8

object named as

Asaph Aharoni

1 reference

Europe PubMed Central

23 November 2017

author name string

Samuel E Bocobza

1

1 reference

Europe PubMed Central

23 November 2017

Sergey Malitsky

2

1 reference

Europe PubMed Central

23 November 2017

Sagit Meir

5

1 reference

Europe PubMed Central

23 November 2017

Michal Shapira

6

1 reference

Europe PubMed Central

23 November 2017

language of work or name

1 reference

based on heuristic

inferred from title

publication date

22 January 2013

1 reference

Europe PubMed Central

23 November 2017

1 reference

Europe PubMed Central

23 November 2017

25

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Europe PubMed Central

23 November 2017

1

1 reference

Europe PubMed Central

23 November 2017

288-307

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Europe PubMed Central

23 November 2017

Procedures for numerical analysis of circadian rhythms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Starch turnover: pathways, regulation and role in growth

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Circadian integration of metabolism and energetics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Circadian control of carbohydrate availability for growth in Arabidopsis plants at night

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Mild reductions in mitochondrial NAD-dependent isocitrate dehydrogenase activity result in altered nitrate assimilation and pigmentation but do not impact growth

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Metabolic control exerted by the 2-oxoglutarate dehydrogenase reaction: a cross-kingdom comparison of the crossroad between energy production and nitrogen assimilation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Impact of clock-associated Arabidopsis pseudo-response regulators in metabolic coordination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Transcript profiling of an Arabidopsis PSEUDO RESPONSE REGULATOR arrhythmic triple mutant reveals a role for the circadian clock in cold stress response.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Adjustment of growth and central metabolism to a mild but sustained nitrogen-limitation in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Inhibition of 2-oxoglutarate dehydrogenase in potato tuber suggests the enzyme is limiting for respiration and confirms its importance in nitrogen assimilation,.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

The transcript and metabolite networks affected by the two clades of Arabidopsis glucosinolate biosynthesis regulators

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Switching the light on plant riboswitches

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Gene expression and metabolism in tomato fruit surface tissues

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Thylakoid membrane remodeling during state transitions in Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

AtTHIC, a gene involved in thiamine biosynthesis in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Thiamine biosynthesis in algae is regulated by riboswitches

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Vitamin B1 biosynthesis in plants requires the essential iron sulfur cluster protein, THIC.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Riboswitch-dependent gene regulation and its evolution in the plant kingdom

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Riboswitch control of gene expression in plants by splicing and alternative 3' end processing of mRNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Reduced expression of succinyl-coenzyme A ligase can be compensated for by up-regulation of the gamma-aminobutyrate shunt in illuminated tomato leaves

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Control of alternative RNA splicing and gene expression by eukaryotic riboswitches

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Structure, mechanism and catalytic duality of thiamine-dependent enzymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Photoperiodic control of flowering: not only by coincidence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Thiamin Phosphorylation by Thiamin Pyrophosphotransferase during Seed Germination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Thiamine pyrophosphate riboswitches are targets for the antimicrobial compound pyrithiamine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Daylength and circadian effects on starch degradation and maltose metabolism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

In vivo respiratory metabolism of illuminated leaves

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Enhanced photosynthetic performance and growth as a consequence of decreasing mitochondrial malate dehydrogenase activity in transgenic tomato plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

A Robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Kinetics of labelling of organic and amino acids in potato tubers by gas chromatography-mass spectrometry following incubation in (13)C labelled isotopes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Respiratory metabolism: glycolysis, the TCA cycle and mitochondrial electron transport

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Adenine riboswitches and gene activation by disruption of a transcription terminator

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

A new chromatographic method for the determination of thiamine and its mono-, di-and triphosphates in animal tissues

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Regulation of pyruvate dehydrogenase complex activity in plant cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Biochemical and physiological studies of Arabidopsis thaliana transgenic lines with repressed expression of the mitochondrial pyruvate dehydrogenase kinase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Sensing Small Molecules by Nascent RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Physiological Signals That Induce Flowering

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Carbon assimilation and metabolism in potato leaves deficient in plastidial phosphoglucomutase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Molecular mechanisms of thiamine utilization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

A small decrease of plastid transketolase activity in antisense tobacco transformants has dramatic effects on photosynthesis and phenylpropanoid metabolism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Fructose 2,6-bisphosphate activates pyrophosphate: fructose-6-phosphate 1-phosphotransferase and increases triose phosphate to hexose phosphate cycling in heterotrophic cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Sucrose synthase activity does not restrict glycolysis in roots of transgenic potato plants under hypoxic conditions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Thiamin biosynthesis in prokaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Constitutive expression of the CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) gene disrupts circadian rhythms and suppresses its own expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Aspartate 155 of human transketolase is essential for thiamine diphosphate-magnesium binding, and cofactor binding is required for dimer formation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

AtGRP7, a nuclear RNA-binding protein as a component of a circadian-regulated negative feedback loop in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

A transketolase assembly defect in a Wernicke-Korsakoff syndrome patient.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Thi1, a thiamine biosynthetic gene in Arabidopsis thaliana, complements bacterial defects in DNA repair.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Evidence for the thiamine biosynthetic pathway in higher-plant plastids and its developmental regulation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Regulation of the pyruvate dehydrogenase complexes in plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Rapid insertional mutagenesis of DNA by polymerase chain reaction (PCR).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Ubiquitin extension proteins of Arabidopsis thaliana. Structure, localization, and expression of their promoters in transgenic tobacco.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Thiamine in Schizosaccharomyces pombe: dephosphorylation, intracellular pool, biosynthesis and transport.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

High control coefficient of transketolase in the nonoxidative pentose phosphate pathway of human erythrocytes: NMR, antibody, and computer simulation studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

27 August 2018

Gas chromatography mass spectrometry–based metabolite profiling in plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584542

1 December 2018

The transition to flowering

1 reference

https://pubmed.ncbi.nlm.nih.gov/23341335

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

LHY and CCA1 are partially redundant genes required to maintain circadian rhythms in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/23341335

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Determination of the genetic, molecular, and biochemical basis of the Arabidopsis thaliana thiamin auxotroph th1

1 reference

https://pubmed.ncbi.nlm.nih.gov/23341335

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mutants of Arabidopsis with altered regulation of starch degradation

1 reference

https://pubmed.ncbi.nlm.nih.gov/23341335

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Deficiency of mitochondrial fumarase activity in tomato plants impairs photosynthesis via an effect on stomatal function

1 reference

https://pubmed.ncbi.nlm.nih.gov/23341335

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A th-1 Mutant of Arabidopsis thaliana Is Defective for a Thiamin-Phosphate-Synthesizing Enzyme: Thiamin Phosphate Pyrophosphorylase

1 reference

https://pubmed.ncbi.nlm.nih.gov/23341335

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Technical advance: application of high-performance liquid chromatography with photodiode array detection to the metabolic profiling of plant isoprenoids

1 reference

https://pubmed.ncbi.nlm.nih.gov/23341335

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mutation of Arabidopsis plastid phosphoglucose isomerase affects leaf starch synthesis and floral initiation

1 reference

https://pubmed.ncbi.nlm.nih.gov/23341335

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Photometric method for routine determination of kcat and carbamylation of rubisco

1 reference

https://pubmed.ncbi.nlm.nih.gov/23341335

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Thiamin pyrophosphokinase is required for thiamin cofactor activation in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/23341335

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sensing small molecules by nascent RNA: a mechanism to control transcription in bacteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/23341335

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1105/TPC.112.106385

1 reference

Europe PubMed Central

23 November 2017

0 references

1 reference

Europe PubMed Central

23 November 2017

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