(Q43591561)

25 November 2017

title

Hydroxyl-radical footprinting to probe equilibrium changes in RNA tertiary structure (English)

1 reference

25 November 2017

Inna Shcherbakova

1

1 reference

25 November 2017

Somdeb Mitra

series ordinal

2

1 reference

25 November 2017

language of work or name

English

0 references

publication date

17 November 2009

1 reference

25 November 2017

published in

Methods in Enzymology

1 reference

25 November 2017

volume

468

1 reference

25 November 2017

page(s)

31-46

1 reference

Protein-independent Folding Pathway of the 16S rRNA 5′ Domain

25 November 2017

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

Hydroxyl radical footprinting in vivo: mapping macromolecular structures with synchrotron radiation

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

Concurrent nucleation of 16S folding and induced fit in 30S ribosome assembly

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

Structure of a folding intermediate reveals the interplay between core and peripheral elements in RNA folding

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

Structural rearrangements linked to global folding pathways of the Azoarcus group I ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

SAFA: semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

Folding Mechanism of theTetrahymenaRibozyme P4−P6 Domain†

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

LXXIII.—Oxidation of tartaric acid in presence of iron

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

DNAase footprinting a simple method for the detection of protein-DNA binding specificity

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

Perturbed folding kinetics of circularly permuted RNAs with altered topology.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

Cleavage of DNA with methidiumpropyl-EDTA-iron(II): reaction conditions and product analyses

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

Concordant exploration of the kinetics of RNA folding from global and local perspectives.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

Semiautomated and rapid quantification of nucleic acid footprinting and structure mapping experiments

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

Distinct contribution of electrostatics, initial conformational ensemble, and macromolecular stability in RNA folding

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

Defining the inside and outside of a catalytic RNA molecule

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

Communication between RNA folding domains revealed by folding of circularly permuted ribozymes

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

Structural transitions and thermodynamics of a glycine-dependent riboswitch from Vibrio cholerae

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

Following the dynamics of changes in solvent accessibility of 16 S and 23 S rRNA during ribosomal subunit association using synchrotron-generated hydroxyl radicals

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

Stability and cooperativity of individual tertiary contacts in RNA revealed through chemical denaturation.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

Complementing global measures of RNA folding with local reports of backbone solvent accessibility by time resolved hydroxyl radical footprinting

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

Hinge stiffness is a barrier to RNA folding

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

Time-resolved synchrotron X-ray "footprinting", a new approach to the study of nucleic acid structure and function: application to protein-DNA interactions and RNA folding.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

[19] Following the folding of RNA with time-resolved synchrotron X-ray footprinting

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

Perturbation of the hierarchical folding of a large RNA by the destabilization of its Scaffold's tertiary structure

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

Monitoring structural changes in nucleic acids with single residue spatial and millisecond time resolution by quantitative hydroxyl radical footprinting

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

Monovalent ion-mediated folding of the Tetrahymena thermophila ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

Fast Fenton footprinting: a laboratory-based method for the time-resolved analysis of DNA, RNA and proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

Following molecular transitions with single residue spatial and millisecond time resolution.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

Multiple folding pathways for the P4-P6 RNA domain

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

An alternative route for the folding of large RNAs: apparent two-state folding by a group II intron ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

Productive folding to the native state by a group II intron ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

Monovalent cations mediate formation of native tertiary structure of the Tetrahymena thermophila ribozyme.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

Principles of RNA Compaction: Insights from the Equilibrium Folding Pathway of the P4-P6 RNA Domain in Monovalent Cations

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

DMS footprinting of structured RNAs and RNA-protein complexes

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

Hydroxyl radical "footprinting": high-resolution information about DNA-protein contacts and application to lambda repressor and Cro protein

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

Hydroxyl radical footprinting: a high-resolution method for mapping protein-DNA contacts

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

Linkage of monovalent and divalent ion binding in the folding of the P4-P6 domain of the Tetrahymena ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

Multiple Monovalent Ion-dependent Pathways for the Folding of the L-21 Tetrahymena thermophila Ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2968002-2

7 January 2021

10.1016/S0076-6879(09)68002-2

Identifiers

DOI

1 reference

25 November 2017

1 reference