(Q43675414)

English

An extra nucleotide in the consensus catalytic core of a viroid hammerhead ribozyme: implications for the design of more efficient ribozymes.

scientific article published on 13 July 2001

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scholarly article

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11454858%20AND%20SRC:MED&resulttype=core&format=json

9 November 2019

An extra nucleotide in the consensus catalytic core of a viroid hammerhead ribozyme: implications for the design of more efficient ribozymes (English)

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11454858%20AND%20SRC:MED&resulttype=core&format=json

9 November 2019

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Marcos de la Peña

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9 November 2019

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11454858%20AND%20SRC:MED&resulttype=core&format=json

9 November 2019

author name string

Flores R

2

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25 November 2017

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publication date

13 July 2001

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9 November 2019

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8

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Journal of Biological Chemistry

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Europe PubMed Central

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9 November 2019

276

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9 November 2019

37

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9 November 2019

34586-34593

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Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11454858%20AND%20SRC:MED&resulttype=core&format=json

9 November 2019

Functional distinctions between the ribonucleic acids from citrus exocortis viroid and plant viruses: cell-free translation and aminoacylation reactions.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Nucleotide sequence and secondary structure of potato spindle tuber viroid

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Longer-than-unit-length viroid minus strands are present in RNA from infected plants

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

RNA intermediates in potato spindle tuber viroid replication

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

RNA sequences complementary to citrus exocortis viroid in nucleic acid preparations from infected Gynura aurantiaca

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

A Replication Cycle for Viroids and Other Small Infectious RNA's

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Avocado sunblotch viroid: primary sequence and proposed secondary structure

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Self-cleavage of plus and minus RNA transcripts of avocado sunblotch viroid

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Plus and minus RNAs of peach latent mosaic viroid self-cleave in vitro via hammerhead structures

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Chrysanthemum chlorotic mottle viroid: unusual structural properties of a subgroup of self-cleaving viroids with hammerhead ribozymes.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Avsunviroidae family: viroids containing hammerhead ribozymes

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Replication of avocado sunblotch viroid: evidence for a symmetric pathway with two rolling circles and hammerhead ribozyme processing.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Evidence for a single rolling circle in the replication of potato spindle tuber viroid

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Precisely full length, circularizable, complementary RNA: an infectious form of potato spindle tuber viroid

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Viroid processing: switch from cleavage to ligation is driven by a change from a tetraloop to a loop E conformation

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Recognition of the universally conserved 3'-CCA end of tRNA by elongation factor EF-Tu

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Autolytic processing of dimeric plant virus satellite RNA

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Self-cleavage of plus and minus RNAs of a virusoid and a structural model for the active sites

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Hammerhead ribozyme structure and function in plant RNA replication.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Sequence requirements of the hammerhead RNA self-cleavage reaction

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Three-dimensional structure of a hammerhead ribozyme

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

The crystal structure of an all-RNA hammerhead ribozyme: a proposed mechanism for RNA catalytic cleavage

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Nucleotide sequence predicts circularity and self-cleavage of 300-ribonucleotide satellite of arabis mosaic virus

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

A satellite RNA of barley yellow dwarf virus contains a novel hammerhead structure in the self-cleavage domain

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Satellite cereal yellow dwarf virus-RPV (satRPV) RNA requires a douXble hammerhead for self-cleavage and an alternative structure for replication

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

The strands of both polarities of a small circular RNA from carnation self-cleave in vitro through alternative double- and single-hammerhead structures

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Mutagenesis analysis of a self-cleaving RNA.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Hammerhead ribozyme kinetics

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Does a single metal ion bridge the A-9 and scissile phosphate groups in the catalytically active hammerhead ribozyme structure?

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Mapping the molecular determinant of pathogenicity in a hammerhead viroid: a tetraloop within the in vivo branched RNA conformation.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

A highly efficient procedure for site-specific mutagenesis of full-length plasmids using Vent DNA polymerase.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Characterization of self-cleavage of viroid and virusoid RNAs

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

A kinetic and thermodynamic framework for the hammerhead ribozyme reaction

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Substrate sequence effects on "hammerhead" RNA catalytic efficiency

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Capture and visualization of a catalytic RNA enzyme-product complex using crystal lattice trapping and X-ray holographic reconstruction

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Involvement of a specific metal ion in the transition of the hammerhead ribozyme to its catalytic conformation.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Hammerhead ribozymes: importance of stem-loop II for activity

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Identification of the hammerhead ribozyme metal ion binding site responsible for rescue of the deleterious effect of a cleavage site phosphorothioate

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Kinetic characterization of intramolecular and intermolecular hammerhead RNAs with stem II deletions

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

In vitro selection of hammerhead ribozymes containing a bulged nucleotide in stem II.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Numbering system for the hammerhead

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Mapping in solution shows the peach latent mosaic viroid to possess a new pseudoknot in a complex, branched secondary structure

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Potato spindle tuber viroid. XII. An investigation of viroid RNA as a messenger for protein synthesis

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Comparison of multimeric plus and minus forms of viroids and virusoids

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Complexes containing both polarity strands of avocado sunblotch viroid: identification in chloroplasts and characterization

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Kinetics of intermolecular cleavage by hammerhead ribozymes

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Significant change in the structure of a ribozyme upon introduction of a phosphorothioate linkage at P9: NMR reveals a conformational fluctuation in the core region of a hammerhead ribozyme

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

The detailed structure of tandem G.A mismatched base-pair motifs in RNA duplexes is context dependent

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M103867200

21 January 2018

Identifiers

10.1074/JBC.M103867200

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11454858%20AND%20SRC:MED&resulttype=core&format=json

9 November 2019

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11454858%20AND%20SRC:MED&resulttype=core&format=json

9 November 2019

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