(Q43860244)

27 November 2017

title

SCARPA: scaffolding reads with practical algorithms (English)

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27 November 2017

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2

Michael Brudno

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27 November 2017

Nilgun Donmez

1

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27 November 2017

language of work or name

English

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publication date

29 December 2012

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27 November 2017

number of pages

7

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based on heuristic

inferred from page(s)

published in

Bioinformatics

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27 November 2017

volume

29

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27 November 2017

issue

4

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27 November 2017

page(s)

428-434

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Scaffolding pre-assembled contigs using SSPACE

27 November 2017

cites work

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS716

SOPRA: Scaffolding algorithm for paired reads via statistical optimization

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS716

Assemblathon 1: a competitive assessment of de novo short read assembly methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS716

De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS716

Algorithm 447: efficient algorithms for graph manipulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS716

Versatile and open software for comparing large genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS716

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS716

Hierarchical scaffolding with Bambus

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS716

Finding odd cycle transversals

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS716

Fast scaffolding with small independent mixed integer programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS716

ABySS: a parallel assembler for short read sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS716

Pebble and rock band: heuristic resolution of repeats and scaffolding in the velvet short-read de novo assembler

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS716

10.1093/BIOINFORMATICS/BTS716

21 January 2018

Identifiers

DOI

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journals/bioinformatics/DonmezB13

27 November 2017

DBLP publication ID

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DBLP Dataset 2021-01-02

28 January 2021

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