(Q43947462)

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Role of hydrophilic and hydrophobic contacts in folding of the second beta-hairpin fragment of protein G: molecular dynamics simulation studies of an all-atom model

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Europe PubMed Central

PubMed publication ID

28 November 2017

Role of hydrophilic and hydrophobic contacts in folding of the second beta-hairpin fragment of protein G: molecular dynamics simulation studies of an all-atom model (English)

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Europe PubMed Central

PubMed publication ID

28 November 2017

protein folding

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based on heuristic

inferred from title

1

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Europe PubMed Central

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28 November 2017

author name string

Apichart Linhananta

2

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Europe PubMed Central

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28 November 2017

language of work or name

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publication date

1 May 2002

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Europe PubMed Central

PubMed publication ID

28 November 2017

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Europe PubMed Central

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28 November 2017

47

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Europe PubMed Central

PubMed publication ID

28 November 2017

2

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Europe PubMed Central

PubMed publication ID

28 November 2017

154-162

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Europe PubMed Central

PubMed publication ID

28 November 2017

Molecular dynamics simulations of unfolding and refolding of a beta-hairpin fragment of protein G

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

Understanding beta-hairpin formation

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

A molecular dynamics study of the 41-56 beta-hairpin from B1 domain of protein G

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

Molecular dynamics simulations of a beta-hairpin fragment of protein G: balance between side-chain and backbone forces

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

Folding dynamics and mechanism of beta-hairpin formation

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

A simple model for calculating the kinetics of protein folding from three-dimensional structures

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

Molecular dynamics simulations of beta-hairpin folding.

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

beta-hairpin stability and folding: molecular dynamics studies of the first beta-hairpin of tendamistat

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

Folding simulations of a three-stranded antiparallel beta -sheet peptide

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

An all atom force field for simulations of proteins and nucleic acids

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

Dynamics and thermodynamics of beta-hairpin assembly: insights from various simulation techniques

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

Mechanisms and kinetics of beta-hairpin formation

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

How does a beta -hairpin fold/unfold? competition between topology and heterogeneity in a solvable model

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

A short linear peptide that folds into a native stable beta-hairpin in aqueous solution

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

Folding thermodynamics of a model three-helix-bundle protein.

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

Is the molten globule a third phase of proteins?

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

A novel, highly stable fold of the immunoglobulin binding domain of streptococcal protein G

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

Folding of a model three-helix bundle protein: a thermodynamic and kinetic analysis.

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

The speed limit for protein folding measured by triplet-triplet energy transfer.

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

Mutational analysis of acylphosphatase suggests the importance of topology and contact order in protein folding.

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

Three key residues form a critical contact network in a protein folding transition state

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

Structural and dynamic characterization of the urea denatured state of the immunoglobulin binding domain of streptococcal protein G by multidimensional heteronuclear NMR spectroscopy.

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

Understanding beta-hairpin formation by molecular dynamics simulations of unfolding

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

The free energy landscape for beta hairpin folding in explicit water

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

The GROMOS Biomolecular Simulation Program Package

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

Thermodynamics of an All-Atom Off-Lattice Model of the Fragment B ofStaphylococcalProtein A: Implication for the Origin of the Cooperativity of Protein Folding

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

Exploring the energy landscape of a beta hairpin in explicit solvent

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

Cooperativity in protein folding: from lattice models with sidechains to real proteins

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

Can protein unfolding simulate protein folding?

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

Is protein unfolding the reverse of protein folding? A lattice simulation analysis

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

Thermodynamics of a beta-hairpin structure: evidence for cooperative formation of folding nucleus

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

Role of side-chains in the cooperative beta-hairpin folding of the short C-terminal fragment derived from streptococcal protein G

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

Simulation of activation free energies in molecular systems

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

The folding thermodynamics and kinetics of crambin using an all-atom Monte Carlo simulation

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

Optimized Monte Carlo data analysis

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

Beta-hairpin folding simulations in atomistic detail using an implicit solvent model

1 reference

https://api.crossref.org/works/10.1002%2FPROT.10065

21 January 2018

Identifiers

10.1002/PROT.10065

1 reference

Europe PubMed Central

PubMed publication ID

28 November 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

28 November 2017

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