(Q44264867)

1 December 2017

title

Paired-end analysis of transcription start sites in Arabidopsis reveals plant-specific promoter signatures (English)

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1 December 2017

3

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9

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8

Uwe Ohler

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1 December 2017

7

Philip N Benfey

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1 December 2017

Taj Morton

1

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1 December 2017

Jalean Petricka

2

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1 December 2017

Song Li

4

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1 December 2017

Cara M Winter

5

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1 December 2017

Alexa Carda

6

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1 December 2017

publication date

17 July 2014

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1 December 2017

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1 December 2017

volume

26

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1 December 2017

issue

7

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1 December 2017

page(s)

2746-2760

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Simultaneous mapping of transcript ends at single-nucleotide resolution and identification of widespread promoter-associated non-coding RNA governed by TATA elements.

1 December 2017

cites work

1 reference

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29 September 2018

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Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis

29 September 2018

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29 September 2018

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Biogenesis, turnover, and mode of action of plant microRNAs

29 September 2018

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29 September 2018

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Perspectives on the RNA polymerase II core promoter

29 September 2018

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Mapping gene activity of Arabidopsis root hairs

29 September 2018

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Clusters of microRNAs emerge by new hairpins in existing transcripts

29 September 2018

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29 September 2018

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High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

29 September 2018

1 reference

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A gene regulatory network for root epidermis cell differentiation in Arabidopsis

29 September 2018

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29 September 2018

1 reference

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Characteristics of core promoter types with respect to gene structure and expression in Arabidopsis thaliana

29 September 2018

1 reference

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CpG islands and the regulation of transcription

29 September 2018

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Genome-wide characterization of transcriptional start sites in humans by integrative transcriptome analysis

29 September 2018

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Transcription initiation patterns indicate divergent strategies for gene regulation at the chromatin level

29 September 2018

1 reference

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Genome-wide analysis of promoter architecture in Drosophila melanogaster.

29 September 2018

1 reference

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A paired-end sequencing strategy to map the complex landscape of transcription initiation

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145111

Regulation of gene expression via the core promoter and the basal transcriptional machinery.

29 September 2018

1 reference

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Motif composition, conservation and condition-specificity of single and alternative transcription start sites in the Drosophila genome

29 September 2018

1 reference

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From transcription start site to cell biology

29 September 2018

1 reference

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A transcription factor affinity-based code for mammalian transcription initiation

29 September 2018

1 reference

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The TRANSFAC project as an example of framework technology that supports the analysis of genomic regulation.

29 September 2018

1 reference

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A code for transcription initiation in mammalian genomes

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145111

JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update

29 September 2018

1 reference

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A high-resolution root spatiotemporal map reveals dominant expression patterns.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145111

Genomic analysis of human microRNA transcripts

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145111

Differentiation of core promoter architecture between plants and mammals revealed by LDSS analysis.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145111

Robust analysis of 5'-transcript ends (5'-RATE): a novel technique for transcriptome analysis and genome annotation

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145111

MicroRNA promoter element discovery in Arabidopsis

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145111

The general transcription machinery and general cofactors

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145111

Genome-wide analysis of mammalian promoter architecture and evolution

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145111

A high-resolution map of transcription in the yeast genome

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145111

A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145111

miRBase: microRNA sequences, targets and gene nomenclature

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145111

The transcriptional landscape of the mammalian genome

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145111

Expression of Arabidopsis MIRNA genes

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145111

Plant promoter prediction with confidence estimation

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145111

Functional annotation of the Arabidopsis genome using controlled vocabularies

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145111

GOstat: find statistically overrepresented Gene Ontologies within a group of genes

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145111

Regulation of RNA polymerase II transcription by sequence-specific DNA binding factors

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145111

Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145111

The RNA polymerase II core promoter

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145111

PlantProm: a database of plant promoter sequences

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145111

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4145111

Genome-wide analysis of rice (Oryza sativa L. subsp. japonica) TATA box and Y Patch promoter elements

29 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25035402

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Heterogeneity of Arabidopsis core promoters revealed by high-density TSS analysis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25035402

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Photosynthesis nuclear genes generally lack TATA-boxes: a tobacco photosystem I gene responds to light through an initiator

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25035402

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1105/TPC.114.125617

1 reference

1 December 2017

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