(Q44451574)

3 December 2017

Flexibility of transcription factor target site position in conserved cis-regulatory modules (English)

1 reference

3 December 2017

2

Eric H Davidson

1 reference

3 December 2017

R Andrew Cameron

1

1 reference

PubMed ID

19766623

3 December 2017

language of work or name

English

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publication date

18 September 2009

1 reference

3 December 2017

Developmental Biology

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3 December 2017

336

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3 December 2017

1

1 reference

3 December 2017

122-135

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Molecular Characterization of Helix-Loop-Helix Peptides

3 December 2017

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Evolutionary analysis of the well characterized endo16 promoter reveals substantial variation within functional sites

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

The gene regulatory network basis of the "community effect," and analysis of a sea urchin embryo example

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

New computational approaches for analysis of cis-regulatory networks.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Functional architecture and evolution of transcriptional elements that drive gene coexpression

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

A sea urchin genome project: sequence scan, virtual map, and additional resources

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

An evolutionary constraint: strongly disfavored class of change in DNA sequence during divergence of cis-regulatory modules.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

MatInspector and beyond: promoter analysis based on transcription factor binding sites

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Change in quantity and size distribution of small circular DNAs during development of chicken bursa

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Isolation and preliminary characterization of the small circular DNA present in African green monkey kidney (BSC-1) cells

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Evolution of transcription factor binding sites in Mammalian gene regulatory regions: conservation and turnover

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Tracing the evolutionary history of Drosophila regulatory regions with models that identify transcription factor binding sites.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Tuning in to the signals: noncoding sequence conservation in vertebrate genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Evolution of the dorsal-ventral patterning network in the mosquito, Anopheles gambiae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

POU domain factors of the Brn-3 class recognize functional DNA elements which are distinctive, symmetrical, and highly conserved in evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Sepsid even-skipped enhancers are functionally conserved in Drosophila despite lack of sequence conservation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Caught in the evolutionary act: precise cis-regulatory basis of difference in the organization of gene networks of sea stars and sea urchins.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

How the Dorsal gradient works: insights from postgenome technologies

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

High regulatory gene use in sea urchin embryogenesis: Implications for bilaterian development and evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Overexpression, purification, and biophysical characterization of the heterodimerization domain of the core-binding factor beta subunit.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Chromatin domain activation via GATA-1 utilization of a small subset of dispersed GATA motifs within a broad chromosomal region

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Identification and characterization of a novel repressor of beta-interferon gene expression

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Multigenome DNA sequence conservation identifies Hox cis-regulatory elements

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Design flexibility in cis-regulatory control of gene expression: synthetic and comparative evidence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

The mechanism of human nonhomologous DNA end joining

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Regulation of spblimp1/krox1a, an alternatively transcribed isoform expressed in midgut and hindgut of the sea urchin gastrula.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Evidence for stabilizing selection in a eukaryotic enhancer element.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Functional evolution of a cis-regulatory module

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Hierarchy of nonhomologous end-joining, single-strand annealing and gene conversion at site-directed DNA double-strand breaks

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

cis-Regulatory inputs of the wnt8 gene in the sea urchin endomesoderm network.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Cis-regulatory control of the nodal gene, initiator of the sea urchin oral ectoderm gene network

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Transcript profiling during mouse oocyte development and the effect of gonadotropin priming and development in vitro

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

A rationale for the enhanceosome and other evolutionarily constrained enhancers.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

In vivo enhancer analysis of human conserved non-coding sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Cis-regulatory analysis of nodal and maternal control of dorsal-ventral axis formation by Univin, a TGF- related to Vg1

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

cis-regulatory processing of Notch signaling input to the sea urchin glial cells missing gene during mesoderm specification

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

The words of the regulatory code are arranged in a variable manner in highly conserved enhancers.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

R11: a cis-regulatory node of the sea urchin embryo gene network that controls early expression of SpDelta in micromeres

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

The regulator of early gliogenesis glial cells missing is a transcription factor with a novel type of DNA-binding domain

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Crystal structure of a Smad MH1 domain bound to DNA: insights on DNA binding in TGF-beta signaling

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Gene regulatory network subcircuit controlling a dynamic spatial pattern of signaling in the sea urchin embryo

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Testing the molecular clock: molecular and paleontological estimates of divergence times in the Echinoidea (Echinodermata).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

A spatially dynamic cohort of regulatory genes in the endomesodermal gene network of the sea urchin embryo

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Small circular DNA in Drosophila melanogaster.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Selective degradation of transcripts during meiotic maturation of mouse oocytes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

An efficient cis-element discovery method using multiple sequence comparisons based on evolutionary relationships.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Regulation of the human ADAMTS-4 promoter by transcription factors and cytokines

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Conservation and diversity in the cis-regulatory networks that integrate information controlling expression of Hoxa2 in hindbrain and cranial neural crest cells in vertebrates

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Expression of Hoxa2 in rhombomere 4 is regulated by a conserved cross-regulatory mechanism dependent upon Hoxb1.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Parallel evolution of conserved non-coding elements that target a common set of developmental regulatory genes from worms to humans

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Evolutionary analysis of the cis-regulatory region of the spicule matrix gene SM50 in strongylocentrotid sea urchins.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Large number of ultraconserved elements were already present in the jawed vertebrate ancestor

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Evolutionary and functional analysis of the tailless enhancer in Musca domestica and Drosophila melanogaster

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Genomic cis-regulatory logic: experimental and computational analysis of a sea urchin gene

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Patchy interspecific sequence similarities efficiently identify positive cis-regulatory elements in the sea urchin

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

An otx cis-regulatory module: a key node in the sea urchin endomesoderm gene regulatory network

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

Human Smad3 and Smad4 are sequence-specific transcription activators

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YDBIO.2009.09.018

10.1016/J.YDBIO.2009.09.018

7 January 2021

Identifiers

DOI

1 reference

3 December 2017

1 reference

PubMed ID

19766623