(Q44584038)

English

The herpesvirus alkaline exonuclease belongs to the restriction endonuclease PD-(D/E)XK superfamily: insight from molecular modeling and phylogenetic analysis

scientific article published in March 2001

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

4 December 2017

The herpesvirus alkaline exonuclease belongs to the restriction endonuclease PD-(D/E)XK superfamily: insight from molecular modeling and phylogenetic analysis (English)

1 reference

Europe PubMed Central

PubMed publication ID

4 December 2017

1 reference

based on heuristic

inferred from title

Janusz Bujnicki

1

object named as

J M Bujnicki

1 reference

Europe PubMed Central

PubMed publication ID

4 December 2017

Leszek Rychlewski

2

object named as

L Rychlewski

1 reference

Europe PubMed Central

PubMed publication ID

4 December 2017

publication date

1 March 2001

1 reference

Europe PubMed Central

PubMed publication ID

4 December 2017

1 reference

Europe PubMed Central

PubMed publication ID

4 December 2017

22

1 reference

Europe PubMed Central

PubMed publication ID

4 December 2017

2

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Europe PubMed Central

PubMed publication ID

4 December 2017

219-230

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Europe PubMed Central

PubMed publication ID

4 December 2017

https://scigraph.springernature.com/pub.10.1023/a:1008131810233

0 references

Construction of phylogenetic trees

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The herpes simplex virus type 1 alkaline nuclease is not essential for viral DNA synthesis: isolation and characterization of a lacZ insertion mutant

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Exonuclease Activity of HSV-1 UL12 Is Required forin VivoFunction

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of Epstein-Barr virus DNase and its interaction with the major DNA binding protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conserved domains in DNA repair proteins and evolution of repair systems

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The neighbor-joining method: a new method for reconstructing phylogenetic trees

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Five-stranded beta-sheet sandwiched with two alpha-helices: a structural link between restriction endonucleases EcoRI and EcoRV

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of the complete nucleotide sequence of African swine fever virus

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Flexible loops and helical arches

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of the endonuclease domain encoded by R2 and other site-specific, non-long terminal repeat retrotransposable elements

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Herpes simplex virus 1 alkaline nuclease is required for efficient egress of capsids from the nucleus

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The rapid generation of mutation data matrices from protein sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular evolution of herpesviruses: genomic and protein sequence comparisons

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural, functional, and evolutionary relationships between lambda-exonuclease and the type II restriction endonucleases

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence for an evolutionary relationship among type-II restriction endonucleases

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular phylogeny and evolutionary timescale for the family of mammalian herpesviruses

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The product of the UL12.5 gene of herpes simplex virus type 1 is a capsid-associated nuclease

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Type II restriction endonucleases: structural, functional and evolutionary relationships

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome sequence comparison and scenarios for gene rearrangements: a test case

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Multiple model approach--dealing with alignment ambiguities in protein modeling.

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Duplicated genes within the variable right end of the genome of a pathogenic isolate of African swine fever virus

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence analysis of the Xestia c-nigrum granulovirus genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Distinct regions of EBV DNase are required for nuclease and DNA binding activities

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Association between the herpes simplex virus major DNA-binding protein and alkaline nuclease

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparison of sequence profiles. Strategies for structural predictions using sequence information

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of 43 kb of the Chlorella virus PBCV-1 330-kb genome: map positions 45 to 88.

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The product of a 1.9-kb mRNA which overlaps the HSV-1 alkaline nuclease gene (UL12) cannot relieve the growth defects of a null mutant

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Toroidal structure of lambda-exonuclease

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

TreeView: an application to display phylogenetic trees on personal computers

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystallographic and functional studies of very short patch repair endonuclease

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Recognition of errors in three-dimensional structures of proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phylogeny of the restriction endonuclease-like superfamily inferred from comparison of protein structures

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Geminivirus-related extrachromosomal DNAs of the X-clade phytoplasmas share high sequence similarity

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Herpes simplex virus type 1 alkaline nuclease is required for efficient processing of viral DNA replication intermediates

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNase Induced After Infection of KB Cells by Herpes Simplex Virus Type 1 or Type 2 II. Characterization of an Associated Endonuclease Activity

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The deoxyribonuclease induced after infection of KB cells by herpes simplex virus type 1 or type 2. I. Purification and characterization of the enzyme

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Errors in protein structures

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ProMod and Swiss-Model: Internet-based tools for automated comparative protein modelling

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural basis for MutH activation in E.coli mismatch repair and relationship of MutH to restriction endonucleases

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Recognition and cleavage of DNA by type-II restriction endonucleases

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure-function analysis of the herpes simplex virus type 1 UL12 gene: correlation of deoxyribonuclease activity in vitro with replication function

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparative protein modelling by satisfaction of spatial restraints

1 reference

https://pubmed.ncbi.nlm.nih.gov/11324759

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1023/A:1008131810233

1 reference

Europe PubMed Central

PubMed publication ID

4 December 2017

Dimensions Publication ID

0 references

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

4 December 2017

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