(Q45002296)

English

Reconstruction of a high-quality metabolic model enables the identification of gene overexpression targets for enhanced antibiotic production in Streptomyces coelicolor A3(2).

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scholarly article

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Europe PubMed Central

8 December 2017

Reconstruction of a high-quality metabolic model enables the identification of gene overexpression targets for enhanced antibiotic production in Streptomyces coelicolor A3(2). (English)

1 reference

Europe PubMed Central

8 December 2017

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Streptomyces coelicolor

object named as

Streptomyces coelicolor

1 reference

based on heuristic

inferred from title

object named as

Minsuk Kim

1

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author name string

Jeong Sang Yi

2

1 reference

Europe PubMed Central

8 December 2017

Joonwon Kim

3

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Europe PubMed Central

8 December 2017

Ji-Nu Kim

4

1 reference

Europe PubMed Central

8 December 2017

Min Woo Kim

5

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Europe PubMed Central

8 December 2017

Byung-Gee Kim

6

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Europe PubMed Central

8 December 2017

publication date

23 April 2014

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Europe PubMed Central

8 December 2017

Biotechnology Journal

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Europe PubMed Central

8 December 2017

9

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Europe PubMed Central

8 December 2017

9

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Europe PubMed Central

8 December 2017

1185-1194

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Europe PubMed Central

8 December 2017

Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2)

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300539

21 January 2018

BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions

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Recent advances in reconstruction and applications of genome-scale metabolic models

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A comprehensive genome-scale reconstruction of Escherichia coli metabolism--2011.

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A community-driven global reconstruction of human metabolism.

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Genome-scale analysis of Streptomyces coelicolor A3(2) metabolism

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300539

21 January 2018

Antibiotic overproduction in Streptomyces coelicolor A3 2 mediated by phosphofructokinase deletion

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300539

21 January 2018

Selection of objective function in genome scale flux balance analysis for process feed development in antibiotic production

1 reference

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21 January 2018

An alternative menaquinone biosynthetic pathway operating in microorganisms

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https://api.crossref.org/works/10.1002%2FBIOT.201300539

21 January 2018

Systems biology and biotechnology of Streptomyces species for the production of secondary metabolites

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300539

21 January 2018

Metabolic and evolutionary insights into the closely-related species Streptomyces coelicolor and Streptomyces lividans deduced from high-resolution comparative genomic hybridization.

1 reference

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21 January 2018

Genome-scale metabolic flux analysis of Streptomyces lividans growing on a complex medium.

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21 January 2018

Genome-scale metabolic network guided engineering of Streptomyces tsukubaensis for FK506 production improvement

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21 January 2018

Basic and applied uses of genome-scale metabolic network reconstructions of Escherichia coli

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Fifteen years of large scale metabolic modeling of yeast: developments and impacts

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Version 6 of the consensus yeast metabolic network refines biochemical coverage and improves model performance.

1 reference

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iBsu1103: a new genome-scale metabolic model of Bacillus subtilis based on SEED annotations

1 reference

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21 January 2018

Comparative genome-scale metabolic reconstruction and flux balance analysis of multiple Staphylococcus aureus genomes identify novel antimicrobial drug targets

1 reference

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21 January 2018

In silico genome-scale metabolic analysis of Pseudomonas putida KT2440 for polyhydroxyalkanoate synthesis, degradation of aromatics and anaerobic survival.

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300539

21 January 2018

Flux coupling and transcriptional regulation within the metabolic network of the photosynthetic bacterium Synechocystis sp. PCC6803.

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300539

21 January 2018

Genome-scale analysis of Mannheimia succiniciproducens metabolism.

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300539

21 January 2018

Metabolic modeling and analysis of the metabolic switch in Streptomyces coelicolor

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300539

21 January 2018

A protocol for generating a high-quality genome-scale metabolic reconstruction

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300539

21 January 2018

Expansion of the BioCyc collection of pathway/genome databases to 160 genomes

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300539

21 January 2018

KEGG: kyoto encyclopedia of genes and genomes

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300539

21 January 2018

TransportDB: a comprehensive database resource for cytoplasmic membrane transport systems and outer membrane channels

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300539

21 January 2018

BLAST+: architecture and applications

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300539

21 January 2018

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300539

21 January 2018

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300539

21 January 2018

OptFlux: an open-source software platform for in silico metabolic engineering

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300539

21 January 2018

What is flux balance analysis?

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300539

21 January 2018

In silico identification of gene amplification targets for improvement of lycopene production

1 reference

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Engineering precursor metabolite pools for increasing production of antitumor mithramycins in Streptomyces argillaceus

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21 January 2018

Combined in silico modeling and metabolomics analysis to characterize fed-batch CHO cell culture.

1 reference

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21 January 2018

Alteration of the fatty acid profile of Streptomyces coelicolor by replacement of the initiation enzyme 3-ketoacyl acyl carrier protein synthase III (FabH).

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300539

21 January 2018

Branched-chain amino acid catabolism provides precursors for the Type II polyketide antibiotic, actinorhodin, via pathways that are nutrient dependent

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300539

21 January 2018

An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300539

21 January 2018

Fumarate reductase activity maintains an energized membrane in anaerobic Mycobacterium tuberculosis.

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300539

21 January 2018

Economics of membrane occupancy and respiro-fermentation

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300539

21 January 2018

Sequence, transcriptional, and functional analyses of the valine (branched-chain amino acid) dehydrogenase gene of Streptomyces coelicolor

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300539

21 January 2018

Cloning and characterization of a gene (msdA) encoding methylmalonic acid semialdehyde dehydrogenase from Streptomyces coelicolor

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300539

21 January 2018

Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae

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GIM3E: condition-specific models of cellular metabolism developed from metabolomics and expression data

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Optknock: a bilevel programming framework for identifying gene knockout strategies for microbial strain optimization

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EMILiO: a fast algorithm for genome-scale strain design.

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21 January 2018

Molecular regulation of antibiotic biosynthesis in streptomyces.

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300539

21 January 2018

Engineering of primary carbohydrate metabolism for increased production of actinorhodin in Streptomyces coelicolor

1 reference

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21 January 2018

Characterization of a new ScbR-like γ-butyrolactone binding regulator (SlbR) in Streptomyces coelicolor.

1 reference

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21 January 2018

Production of actinorhodin by Streptomyces coelicolor A3(2) grown in chemostat culture

0 references

Identifiers

10.1002/BIOT.201300539

1 reference

Europe PubMed Central

8 December 2017

1 reference

Europe PubMed Central

8 December 2017

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