(Q45157927)

English

Genome-wide analysis of plastid gene expression in potato leaf chloroplasts and tuber amyloplasts: transcriptional and posttranscriptional control

scientific article published on 3 June 2009

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

10 December 2017

Genome-wide analysis of plastid gene expression in potato leaf chloroplasts and tuber amyloplasts: transcriptional and posttranscriptional control (English)

1 reference

Europe PubMed Central

10 December 2017

8

1 reference

Europe PubMed Central

10 December 2017

7

object named as

Ralph Bock

1 reference

Europe PubMed Central

10 December 2017

author name string

Vladimir T Valkov

1

1 reference

Europe PubMed Central

10 December 2017

Nunzia Scotti

2

1 reference

Europe PubMed Central

10 December 2017

Sabine Kahlau

3

1 reference

Europe PubMed Central

10 December 2017

Daniel Maclean

4

1 reference

Europe PubMed Central

10 December 2017

Stefania Grillo

5

1 reference

Europe PubMed Central

10 December 2017

John C Gray

6

1 reference

Europe PubMed Central

10 December 2017

language of work or name

0 references

publication date

3 June 2009

1 reference

Europe PubMed Central

10 December 2017

Plant Physiology

1 reference

Europe PubMed Central

10 December 2017

150

1 reference

Europe PubMed Central

10 December 2017

4

1 reference

Europe PubMed Central

10 December 2017

2030-2044

1 reference

Europe PubMed Central

10 December 2017

Expression of a cDNA for chloroplast ribosomal protein S16 of potato (Solanum tuberosum L.).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Expression of matK: functional and evolutionary implications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Insensitivity of chloroplast gene expression to DNA methylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

A member of the Whirly family is a multifunctional RNA- and DNA-binding protein that is essential for chloroplast biogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

GLK transcription factors regulate chloroplast development in a cell-autonomous manner

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Plastid transcriptomics and translatomics of tomato fruit development and chloroplast-to-chromoplast differentiation: chromoplast gene expression largely serves the production of a single protein.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Coordination of gene expression between organellar and nuclear genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Co-regulation of nuclear genes encoding plastid ribosomal proteins by light and plastid signals during seedling development in tobacco and Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Chloroplast translation regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

From seedling to mature plant: arabidopsis plastidial genome copy number, RNA accumulation and transcription are differentially regulated during leaf development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Plastid biogenesis, between light and shadows

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Disruption of essential plastid gene expression caused by T7 RNA polymerase-mediated transcription of plastid transgenes during early seedling development.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

The complete chloroplast genome sequences of Solanum tuberosum and comparative analysis with Solanaceae species identified the presence of a 241-bp deletion in cultivated potato chloroplast DNA sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Sequence of the tomato chloroplast DNA and evolutionary comparison of solanaceous plastid genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Plastid transcription activity and DNA copy number increase early in barley chloroplast development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Constitutive transcription and regulation of gene expression in non-photosynthetic plastids of higher plants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Transcription and RNA stability are important determinants of higher plant chloroplast RNA levels.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Constancy of organellar genome copy numbers during leaf development and senescence in higher plants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Development- and tissue-specific expression of the RpoT gene family of Arabidopsis encoding mitochondrial and plastid RNA polymerases.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

The genomics of land plant chloroplasts: Gene content and alteration of genomic information by RNA editing.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

The tobacco plastid accD gene is essential and is required for leaf development.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Plastid-expressed betaine aldehyde dehydrogenase gene in carrot cultured cells, roots, and leaves confers enhanced salt tolerance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Analysis of developing maize plastids reveals two mRNA stability classes correlating with RNA polymerase type

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Characterization of the plastid-encoded carboxyltransferase subunit (accD) gene of potato

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

The rbcL genes of two Cuscuta species, C. gronovii and C. subinclusa, are transcribed by the nuclear-encoded plastid RNA polymerase (NEP).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

PPR motifs of the nucleus-encoded factor, PGR3, function in the selective and distinct steps of chloroplast gene expression in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Possible involvement of the 5'-flanking region and the 5'UTR of plastid accD gene in NEP-dependent transcription.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

A chloroplast‐localized PPR protein required for plastid ribosome accumulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

The plastid clpP1 protease gene is essential for plant development.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Developmental co-variation of RNA editing extent of plastid editing sites exhibiting similar cis-elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Identifying differentially expressed genes using false discovery rate controlling procedures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Changes in Chloroplast mRNA Stability during Leaf Development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Overexpression of the clpP 5'-untranslated region in a chimeric context causes a mutant phenotype, suggesting competition for a clpP-specific RNA maturation factor in tobacco chloroplasts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Comparative analysis of plastid transcription profiles of entire plastid chromosomes from tobacco attributed to wild-type and PEP-deficient transcription machineries.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Searching limiting steps in the expression of chloroplast-encoded proteins: relations between gene copy number, transcription, transcript abundance and translation rate in the chloroplast of Chlamydomonas reinhardtii.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

The amino acid sequence of a plastid protein is developmentally regulated by RNA editing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Stable genetic transformation of tomato plastids and expression of a foreign protein in fruit

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Disruption of plastid-encoded RNA polymerase genes in tobacco: expression of only a distinct set of genes is not based on selective transcription of the plastid chromosome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Participation of nuclear genes in chloroplast gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Sense from nonsense: how the genetic information of chloroplasts is altered by RNA editing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

The role of sigma factors in plastid transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Regulation of rDNA transcription in plastids of higher plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

The two largest chloroplast genome-encoded open reading frames of higher plants are essential genes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

RNA editing sites in tobacco chloroplast transcripts: editing as a possible regulator of chloroplast RNA polymerase activity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

In vitro biosynthesis of phosphorylated starch in intact potato amyloplasts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Cloning and characterization of plastid ribosomal protein S16 gene from potato (Solanum tuberosum L. cv Désirée).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Splicing and intron-internal RNA editing of trnK-matK transcripts in barley plastids: support for MatK as an essential splice factor.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

The two RNA polymerases encoded by the nuclear and the plastid compartments transcribe distinct groups of genes in tobacco plastids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Evidence for transcriptional regulation of plastid photosynthesis genes in Arabidopsis thaliana roots.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Deletion of rpoB reveals a second distinct transcription system in plastids of higher plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Direct evidence for selective modulation of psbA, rpoA, rbcL and 16S RNA stability during barley chloroplast development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Chloroplast rRNA transcription from structurally different tandem promoters: an additional novel-type promoter.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Light-responsive and transcription-enhancing elements regulate the plastid psbD core promoter.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Genomic sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Tissue-dependent plastid RNA splicing in maize: transcripts from four plastid genes are predominantly unspliced in leaf meristems and roots

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

DNA methylation is a determinative element of photosynthesis gene expression in amyloplasts from liquid-cultured cells of sycamore (Acer pseudoplatanus L.).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719133

7 October 2018

Plastids of three Cuscuta species differing in plastid coding capacity have a common parasite-specific RNA composition

1 reference

https://pubmed.ncbi.nlm.nih.gov/19493969

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Relations between the plastid gene dosage and the levels of 16S rRNA and rbcL gene transcripts during amyloplast to chloroplast change in mixotrophic spinach cell suspensions

1 reference

https://pubmed.ncbi.nlm.nih.gov/19493969

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

rbcL Transcript levels in tobacco plastids are independent of light: reduced dark transcription rate is compensated by increased mRNA stability

1 reference

https://pubmed.ncbi.nlm.nih.gov/19493969

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A rapid, single leaf, nucleic acid assay for determining the cytoplasmic organelle complement of rapeseed and related Brassica species

1 reference

https://pubmed.ncbi.nlm.nih.gov/19493969

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complete chloroplast genome sequences of Solanum bulbocastanum, Solanum lycopersicum and comparative analyses with other Solanaceae genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/19493969

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Technical Advance: Stable chloroplast transformation in potato: use of green fluorescent protein as a plastid marker

1 reference

https://pubmed.ncbi.nlm.nih.gov/19493969

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The sequence and secondary structure of the 3'-UTR affect 3'-end maturation, RNA accumulation, and translation in tobacco chloroplasts

1 reference

https://pubmed.ncbi.nlm.nih.gov/19493969

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Array-based analysis on tobacco plastid transcripts: preparation of a genomic microarray containing all genes and all intergenic regions

1 reference

https://pubmed.ncbi.nlm.nih.gov/19493969

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conversion of proplastids to amyloplasts in tobacco cultured cells is accompanied by changes in the transcriptional activities of plastid genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/19493969

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Light-induced transformation of amyloplasts into chloroplasts in potato tubers

1 reference

https://pubmed.ncbi.nlm.nih.gov/19493969

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Plastid-DNA levels in the different tissues of potato

1 reference

https://pubmed.ncbi.nlm.nih.gov/19493969

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A nucleus-encoded factor, CRR2, is essential for the expression of chloroplast ndhB in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19493969

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of gene expression in amyloplasts of potato tubers

1 reference

https://pubmed.ncbi.nlm.nih.gov/19493969

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1104/PP.109.140483

1 reference

Europe PubMed Central

10 December 2017

0 references

1 reference

Europe PubMed Central

10 December 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q45157927&oldid=2068202942"