(Q45198031)

10 December 2017

Coalescent methods are robust to the simultaneous effects of long branches and incomplete lineage sorting (English)

1 reference

10 December 2017

Charles Cavender Davis

series ordinal

3

object named as

Charles C Davis

1 reference

10 December 2017

Liang Liu

1

1 reference

PubMed ID

25431481

10 December 2017

Zhenxiang Xi

series ordinal

2

1 reference

10 December 2017

26 November 2014

1 reference

Molecular Biology and Evolution

10 December 2017

1 reference

10 December 2017

32

1 reference

10 December 2017

3

1 reference

10 December 2017

791-805

1 reference

Should we be worried about long-branch attraction in real data sets? Investigations using metazoan 18S rDNA.

10 December 2017

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

A review of long-branch attraction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Integrating phylogenetic and population genetic analyses of multiple loci to test species divergence hypotheses in Passerina buntings

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Explosive radiation of Malpighiales supports a mid-cretaceous origin of modern tropical rain forests

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

The supermatrix approach to systematics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Discordance of species trees with their most likely gene trees.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Gene tree discordance, phylogenetic inference and the multispecies coalescent

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Broad phylogenomic sampling improves resolution of the animal tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Is a new and general theory of molecular systematics emerging?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Cases in which Parsimony or Compatibility Methods will be Positively Misleading

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Multigene phylogeny of the green lineage reveals the origin and diversification of land plants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Assessing the root of bilaterian animals with scalable phylogenomic methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Bayesian inference of species trees from multilocus data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Addressing inter-gene heterogeneity in maximum likelihood phylogenomic analysis: yeasts revisited

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Application and accuracy of molecular phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Long-branch attraction bias and inconsistency in Bayesian phylogenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

STEM: species tree estimation using maximum likelihood for gene trees under coalescence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Inconsistency of phylogenetic estimates from concatenated data under coalescence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Long branch effects distort maximum likelihood phylogenies in simulations despite selection of the correct model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Bears in a forest of gene trees: phylogenetic inference is complicated by incomplete lineage sorting and gene flow

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Watching the clock: studying variation in rates of molecular evolution between species

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

The accuracy of species tree estimation under simulation: a comparison of methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

A functional phylogenomic view of the seed plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

BEST: Bayesian estimation of species trees under the coalescent model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Phybase: an R package for species tree analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Estimating species trees from unrooted gene trees.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

A maximum pseudo-likelihood approach for estimating species trees under the coalescent model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Coalescent methods for estimating phylogenetic trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Estimating species phylogenies using coalescence times among sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Escaping from the Felsenstein zone by detecting long branches in phylogenetic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

ASTRAL: genome-scale coalescent-based species tree estimation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Acoelomorph flatworms are deuterostomes related to Xenoturbella

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Resolving difficult phylogenetic questions: why more sequences are not enough

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Difficult phylogenetic questions: more data, maybe; better methods, certainly

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Improved phylogenomic taxon sampling noticeably affects nonbilaterian relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Inferring ancient divergences requires genes with strong phylogenetic signals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Error, bias, and long-branch attraction in data for two chloroplast photosystem genes in seed plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Calculating bootstrap probabilities of phylogeny using multilocus sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

21 January 2018

Long-Branch Abstractions

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Rates of molecular evolution are linked to life history in flowering plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Resolving the evolutionary relationships of molluscs with phylogenomic tools

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Broad phylogenomic sampling and the sister lineage of land plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Phylogenomic analyses elucidate the evolutionary relationships of bats

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Incomplete lineage sorting is common in extant gibbon genera

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Ancient rapid radiations of insects: challenges for phylogenetic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Deciphering ancient rapid radiations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Can Incomplete Taxa Rescue Phylogenetic Analyses from Long-Branch Attraction?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Origin of land plants: do conjugating green algae hold the key?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Coalescent-based species tree inference from gene tree topologies under incomplete lineage sorting by maximum likelihood.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Malpighiales phylogenetics: Gaining ground on one of the most recalcitrant clades in the angiosperm tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Coalescent versus concatenation methods and the placement of Amborella as sister to water lilies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Phylogenomics and coalescent analyses resolve extant seed plant relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Phylogenomics and a posteriori data partitioning resolve the Cretaceous angiosperm radiation Malpighiales

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Origin of land plants using the multispecies coalescent model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

Phylogenomic analysis resolves the interordinal relationships and rapid diversification of the laurasiatherian mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU331

21 January 2018

Identifiers

DOI

10.1093/MOLBEV/MSU331

1 reference

10 December 2017

1 reference

PubMed ID

25431481