(Q45799557)

English

Two novel Ty1-copia retrotransposons isolated from coffee trees can effectively reveal evolutionary relationships in the Coffea genus (Rubiaceae).

scientific article published on 20 April 2011

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scholarly article

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29 January 2020

Two novel Ty1-copia retrotransposons isolated from coffee trees can effectively reveal evolutionary relationships in the Coffea genus (Rubiaceae) (English)

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29 January 2020

object named as

Rubiaceae

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Paulo Mafra D'Almeida Costa

4

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29 January 2020

author name string

Perla Hamon

1

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29 January 2020

Pierre-Olivier Duroy

2

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29 January 2020

Christine Dubreuil-Tranchant

3

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29 January 2020

Caroline Duret

5

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29 January 2020

Norosoa J Razafinarivo

6

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29 January 2020

Emmanuel Couturon

7

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29 January 2020

Serge Hamon

8

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29 January 2020

Alexandre de Kochko

9

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29 January 2020

Valérie Poncet

10

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29 January 2020

Romain Guyot

11

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29 January 2020

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publication date

20 April 2011

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29 January 2020

Molecular Genetics and Genomics

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29 January 2020

285

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29 January 2020

6

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29 January 2020

447-460

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29 January 2020

https://scigraph.springernature.com/pub.10.1007/s00438-011-0617-0

0 references

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

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Transposable element contributions to plant gene and genome evolution

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Molecular characterization of an ethylene receptor gene (CcETR1) in coffee trees, its relationship with fruit development and caffeine content

1 reference

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Phylogenetic analysis of chloroplast DNA variation in Coffea L.

1 reference

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Diversity in coffee assessed with SSR markers: structure of the genus Coffea and perspectives for breeding

1 reference

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An annotated taxonomic conspectus of the genus Coffea (Rubiaceae)

1 reference

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Measures of the Amount of Ecologic Association Between Species

1 reference

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Retrotransposon-based insertion polymorphisms (RBIP) for high throughput marker analysis

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21 January 2018

Microcollinearity in an ethylene receptor coding gene region of the Coffea canephora genome is extensively conserved with Vitis vinifera and other distant dicotyledonous sequenced genomes

1 reference

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21 January 2018

Physical mapping of rDNA and heterochromatin in chromosomes of 16 Coffea species: a revised view of species differentiation.

1 reference

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Retrotransposon populations of Vicia species with varying genome size

1 reference

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The genetic diversity and evolution of field pea (Pisum) studied by high throughput retrotransposon based insertion polymorphism (RBIP) marker analysis

1 reference

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21 January 2018

Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence.

1 reference

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21 January 2018

Applications of retrotransposons as genetic tools in plant biology

1 reference

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21 January 2018

Construction and characterization of a Coffea canephora BAC library to study the organization of sucrose biosynthesis genes

1 reference

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21 January 2018

Analysis of population genetic structure with RAPD markers.

1 reference

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21 January 2018

Isolation and genetic mapping of a Coffea canephora phenylalanine ammonia-lyase gene (CcPAL1) and its involvement in the accumulation of caffeoyl quinic acids

1 reference

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21 January 2018

Towards a Phylogeny for Coffea (Rubiaceae): identifying well-supported lineages based on nuclear and plastid DNA sequences

1 reference

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21 January 2018

Genetic differentiation of wild and cultivated populations: diversity of Coffea canephora Pierre in Uganda.

1 reference

https://api.crossref.org/works/10.1007%2FS00438-011-0617-0

21 January 2018

Genome Size Variations in Diploid African Coffea Species

1 reference

https://api.crossref.org/works/10.1007%2FS00438-011-0617-0

21 January 2018

Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice

1 reference

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Artemis: sequence visualization and annotation

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21 January 2018

Genetic diversity analysis in Vicia species using retrotransposon-based SSAP markers

1 reference

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21 January 2018

Retrotransposon characterisation and fingerprinting of apple clones by S-SAP markers.

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21 January 2018

LTR retrotransposons and flowering plant genome size: emergence of the increase/decrease model

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A unified classification system for eukaryotic transposable elements

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21 January 2018

Genetic diversity and phylogenetic relationship as revealed by inter simple sequence repeat (ISSR) polymorphism in the genus Oryza

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21 January 2018

Differential impact of retrotransposon populations on the genome of allotetraploid tobacco (Nicotiana tabacum)

1 reference

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21 January 2018

The distribution of copia-type retrotransposons and the evolutionary history of tomato and related wild species

1 reference

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21 January 2018

Development of S-SAP markers based on an LTR-like sequence from Medicago sativa L

1 reference

https://pubmed.ncbi.nlm.nih.gov/21505885

12 December 2020

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AFLP and SSR polymorphism in a Coffea interspecific backcross progeny [( C. heterocalyx x C. canephora) x C. canephora]

1 reference

https://pubmed.ncbi.nlm.nih.gov/21505885

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Pea Ty1-copia group retrotransposons: transpositional activity and use as markers to study genetic diversity in Pisum

1 reference

https://pubmed.ncbi.nlm.nih.gov/21505885

12 December 2020

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EMBOSS: the European Molecular Biology Open Software Suite

1 reference

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Molecular markers based on LTR retrotransposons BARE-1 and Jeli uncover different strata of evolutionary relationships in diploid wheats

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12 December 2020

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A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis.

1 reference

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12 December 2020

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Current genetic differentiation of Coffea canephora Pierre ex A. Froehn in the Guineo-Congolian African zone: cumulative impact of ancient climatic changes and recent human activities

1 reference

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12 December 2020

based on heuristic

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The mobility of the tobacco Tnt1 retrotransposon correlates with its transcriptional activation by fungal factors

1 reference

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12 December 2020

based on heuristic

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Genetic distribution of Bare-1-like retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphisms (S-SAP)

1 reference

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Identifiers

10.1007/S00438-011-0617-0

1 reference

Europe PubMed Central

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29 January 2020

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29 January 2020

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