(Q45847143)

16 December 2017

title

Biological function through network topology: a survey of the human diseasome (English)

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16 December 2017

author

Nataša Pržulj

series ordinal

2

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16 December 2017

author name string

Vuk Janjić

series ordinal

1

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16 December 2017

publication date

8 September 2012

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16 December 2017

Briefings in functional genomics

published in

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16 December 2017

volume

11

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16 December 2017

issue

6

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16 December 2017

page(s)

522-532

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16 December 2017

The human disease network

cites work

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Network medicine: a network-based approach to human disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Protein networks in disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Genome-wide association studies in pharmacogenomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Potential etiologic and functional implications of genome-wide association loci for human diseases and traits

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Principles for the post-GWAS functional characterization of cancer risk loci

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

The complete genome of an individual by massively parallel DNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

An agenda for personalized medicine

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

A protein interaction map of Drosophila melanogaster

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Proteome survey reveals modularity of the yeast cell machinery

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Global mapping of the yeast genetic interaction network

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

A human protein-protein interaction network: a resource for annotating the proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Towards a proteome-scale map of the human protein–protein interaction network

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

The protein-protein interaction map of Helicobacter pylori

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

A proteome-wide protein interaction map for Campylobacter jejuni

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

A protein interaction network of the malaria parasite Plasmodium falciparum

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Herpesviral protein networks and their interaction with the human proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Analysis of intraviral protein-protein interactions of the SARS coronavirus ORFeome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

VirusMINT: a viral protein interaction database

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Functional organization of the yeast proteome by systematic analysis of protein complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Identification of novel ErbB3-interacting factors using the split-ubiquitin membrane yeast two-hybrid system

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Detecting interactions with membrane proteins using a membrane two-hybrid assay in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Using yeast as a model to study membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Human protein reference database as a discovery resource for proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

The BioGRID Interaction Database: 2008 update

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

The IntAct molecular interaction database in 2012

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

MINT: the Molecular INTeraction database

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

BIND: the Biomolecular Interaction Network Database

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

The Database of Interacting Proteins: 2004 update

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

STRING 8--a global view on proteins and their functional interactions in 630 organisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

iRefIndex: a consolidated protein interaction database with provenance

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Modification-specific proteomics: strategies for characterization of post-translational modifications using enrichment techniques

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

An empirical framework for binary interactome mapping

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Protein-protein interaction networks and biology--what's the connection?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Challenges and rewards of interaction proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Complex networks and simple models in biology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Subnets of scale-free networks are not scale-free: sampling properties of networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

The effects of incomplete protein interaction data on structural and evolutionary inferences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Comparative assessment of large-scale data sets of protein-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Cost-effective strategies for completing the interactome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

High-quality binary protein interaction map of the yeast interactome network

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Protein-protein interactions: making sense of networks via graph-theoretic modeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Getting connected: analysis and principles of biological networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Metabolic networks are NP-hard to reconstruct

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Integration of metabolic databases for the reconstruction of genome-scale metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Genome‐scale metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Network-based approaches for linking metabolism with environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Metabolite-centric approaches for the discovery of antibacterials using genome-scale metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Flux-sum analysis: a metabolite-centric approach for understanding the metabolic network

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Investigating metabolite essentiality through genome-scale analysis of Escherichia coli production capabilities

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Metabolite essentiality elucidates robustness of Escherichia coli metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Constructing an enzyme-centric view of metabolism.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

An enzyme-centric approach for modelling non-linear biological complexity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

An optimization framework for identifying reaction activation/inhibition or elimination candidates for overproduction in microbial systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Flux balance analysis: interrogating genome-scale metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Evolution of metabolic network organization

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

"Guilt by association" is the exception rather than the rule in gene networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

The implications of human metabolic network topology for disease comorbidity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Comprehensive analysis of human microRNA target networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Metabolic network modeling and simulation for drug targeting and discovery

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

McKusick's Online Mendelian Inheritance in Man (OMIM)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Lethality and centrality in protein networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Evolutionary rate in the protein interaction network

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Protein protein interactions, evolutionary rate, abundance and age.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

No simple dependence between protein evolution rate and the number of protein-protein interactions: only the most prolific interactors tend to evolve slowly

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Interactome-transcriptome analysis reveals the high centrality of genes differentially expressed in lung cancer tissues

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Global topological features of cancer proteins in the human interactome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Discovering disease-genes by topological features in human protein-protein interaction network

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Gene essentiality and the topology of protein interaction networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Network motifs: simple building blocks of complex networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Network motifs in the transcriptional regulation network of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Modeling interactome: scale-free or geometric?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Modeling cellular machinery through biological network comparison

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Biological network comparison using graphlet degree distribution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Graemlin: general and robust alignment of multiple large interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Pairwise alignment of protein interaction networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

IsoRankN: spectral methods for global alignment of multiple protein networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Topological network alignment uncovers biological function and phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Optimal network alignment with graphlet degree vectors

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Integrative network alignment reveals large regions of global network similarity in yeast and human

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Single-molecule studies of nucleocytoplasmic transport: from one dimension to three dimensions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Characterization of the proteasome interaction network using a QTAX-based tag-team strategy and protein interaction network analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Protein interaction network topology uncovers melanogenesis regulatory network components within functional genomics datasets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Network-based prediction of protein function

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

A network of protein-protein interactions in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

An integrated approach to inferring gene-disease associations in humans

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Associating genes and protein complexes with disease via network propagation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Predicting disease genes using protein-protein interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

The power of protein interaction networks for associating genes with diseases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

A human phenome-interactome network of protein complexes implicated in genetic disorders

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Network-based global inference of human disease genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Distinguishing between cancer driver and passenger gene alteration candidates via cross-species comparison: a pilot study.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Identifying cancer driver genes in tumor genome sequencing studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

An integrated approach to uncover drivers of cancer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

A model of Internet topology using k-shell decomposition

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Fluorescent protein FRET: the good, the bad and the ugly

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Dynamic map of protein interactions in the Escherichia coli chemotaxis pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Tracking and elucidating alphavirus-host protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

An in vivo map of the yeast protein interactome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Toward the dynamic interactome: it's about time

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

A mitochondrial paradigm of metabolic and degenerative diseases, aging, and cancer: a dawn for evolutionary medicine

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Mitochondrial diseases in man and mouse

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

The pathophysiology of mitochondrial disease as modeled in the mouse

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Systematic identification of gene annotation errors in the widely used yeast mutation collections.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

The genetic landscape of a cell

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Neighboring-gene effect: a genetic uncertainty principle

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Effect of sampling on topology predictions of protein-protein interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBFGP%2FELS037

Dominating biological networks

21 January 2018

1 reference

12 December 2020

Fifteen years of large scale metabolic modeling of yeast: developments and impacts

1 reference

12 December 2020

Utilizing the split-ubiquitin membrane yeast two-hybrid system to identify protein-protein interactions of integral membrane proteins

1 reference

12 December 2020

A map of the interactome network of the metazoan C. elegans

1 reference

12 December 2020

PathBLAST: a tool for alignment of protein interaction networks

1 reference

12 December 2020

Network medicine--from obesity to the "diseasome"

1 reference

12 December 2020

The impact of multifunctional genes on "guilt by association" analysis

1 reference

12 December 2020

The mitochondrial genome in human adaptive radiation and disease: on the road to therapeutics and performance enhancement

1 reference

12 December 2020

Systems-level cancer gene identification from protein interaction network topology applied to melanogenesis-related functional genomics data

1 reference

12 December 2020

The impact of cellular networks on disease comorbidity

1 reference

12 December 2020

Functional and evolutionary inference in gene networks: does topology matter?

1 reference

12 December 2020

Network biology: understanding the cell's functional organization

1 reference

12 December 2020

1 reference

12 December 2020

Genetic Interactions in Cancer Progression and Treatment

1 reference

12 December 2020

C-GRAAL: common-neighbors-based global GRAph ALignment of biological networks

1 reference

12 December 2020

The role of indirect connections in gene networks in predicting function

1 reference

12 December 2020

Expanded metabolic reconstruction of Helicobacter pylori (iIT341 GSM/GPR): an in silico genome-scale characterization of single- and double-deletion mutants

1 reference

12 December 2020

1 reference

12 December 2020

An analysis of human microRNA and disease associations

1 reference

12 December 2020

Uncovering biological network function via graphlet degree signatures.

1 reference

12 December 2020

Preferential Attachment in the Protein Network Evolution

1 reference

12 December 2020

Complementarity of network and sequence information in homologous proteins

1 reference

12 December 2020

Personal genomics and genome-wide association studies: novel discoveries but limitations for practical personalized medicine

1 reference

12 December 2020

Identifiers

DOI

10.1093/BFGP/ELS037

1 reference

16 December 2017

1 reference

16 December 2017