(Q45943768)

6 July 2018

title

Modeling positional effects of regulatory sequences with spline transformations increases prediction accuracy of deep neural networks. (English)

1 reference

6 July 2018

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Julien Gagneur

4

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Mohammadamin Barekatain

series ordinal

2

object named as

Mohammadamin Barekatain

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6 July 2018

author name string

Žiga Avsec

series ordinal

1

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6 July 2018

Jun Cheng

series ordinal

3

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6 July 2018

language of work or name

English

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publication date

1 April 2018

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6 July 2018

number of pages

9

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based on heuristic

inferred from page(s)

published in

Bioinformatics

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6 July 2018

volume

34

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6 July 2018

issue

8

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6 July 2018

page(s)

1261-1269

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6 July 2018

Creative Commons Attribution 4.0 International

copyright license

start time

16 November 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

DeepCpG: accurate prediction of single-cell DNA methylation states using deep learning

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5905632

GenoGAM: genome-wide generalized additive models for ChIP-Seq analysis

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5905632

RNA-protein binding motifs mining with a new hybrid deep learning based cross-domain knowledge integration approach

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5905632

Basset: learning the regulatory code of the accessible genome with deep convolutional neural networks

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5905632

Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP).

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5905632

Orthogonal matrix factorization enables integrative analysis of multiple RNA binding proteins

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5905632

Predicting effects of noncoding variants with deep learning-based sequence model

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5905632

Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5905632

Structural basis of transcription initiation by RNA polymerase II.

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5905632

Genome-wide discovery of human splicing branchpoints

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5905632

RNA splicing. The human splicing code reveals new insights into the genetic determinants of disease

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5905632

Deep learning of the tissue-regulated splicing code

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5905632

LaSSO, a strategy for genome-wide mapping of intronic lariats and branch points using RNA-seq

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5905632

GENCODE: the reference human genome annotation for The ENCODE Project

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5905632

Genome-wide association between branch point properties and alternative splicing

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5905632

Regularization Paths for Generalized Linear Models via Coordinate Descent

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5905632

The spliceosome: design principles of a dynamic RNP machine

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5905632

Human branch point consensus sequence is yUnAy

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5905632

The ENCODE (ENCyclopedia Of DNA Elements) Project

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5905632

Cryptic branch point activation allows accurate in vitro splicing of human beta-globin intron mutants

10 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5905632

Heterogeneous nuclear ribonucleoproteins: role in RNA splicing

10 July 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29155928

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTX727

1 reference

6 July 2018

journals/bioinformatics/AvsecBCG18

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

6 July 2018

PubMed ID

29155928

1 reference

6 July 2018