(Q45955307)

English

DDIG-in: detecting disease-causing genetic variations due to frameshifting indels and nonsense mutations employing sequence and structural properties at nucleotide and protein levels.

scientific article published on 7 January 2015

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/25573915

DDIG-in: detecting disease-causing genetic variations due to frameshifting indels and nonsense mutations employing sequence and structural properties at nucleotide and protein levels. (English)

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/25573915

2

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/25573915

David N. Cooper

7

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/25573915

9

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/25573915

object named as

Lukas Folkman

1

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6

object named as

Matthew Mort

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/25573915

author name string

Zhixiu Li

3

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/25573915

Bela Stantic

4

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/25573915

Abdul Sattar

5

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Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/25573915

Yunlong Liu

8

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Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/25573915

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publication date

7 January 2015

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Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/25573915

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/25573915

31

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Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/25573915

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1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/25573915

1599-1606

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/25573915

A method and server for predicting damaging missense mutations

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU862

21 January 2018

Basic local alignment search tool

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU862

21 January 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

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21 January 2018

Microdeletions and microinsertions causing human genetic disease: common mechanisms of mutagenesis and the role of local DNA sequence complexity

1 reference

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21 January 2018

PredictSNP: robust and accurate consensus classifier for prediction of disease-related mutations

1 reference

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21 January 2018

A comprehensive study of small non-frameshift insertions/deletions in proteins and prediction of their phenotypic effects by a machine learning method (KD4i).

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU862

21 January 2018

Predicting functionally important residues from sequence conservation.

1 reference

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21 January 2018

Predicting the functional effect of amino acid substitutions and indels

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU862

21 January 2018

Support-vector networks

1 reference

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21 January 2018

Predicting continuous local structure and the effect of its substitution for secondary structure in fragment-free protein structure prediction

1 reference

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21 January 2018

SPINE X: improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles

1 reference

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21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU862

21 January 2018

Feature-based multiple models improve classification of mutation-induced stability changes

1 reference

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21 January 2018

Predicting the effects of frameshifting indels

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU862

21 January 2018

SIFT Indel: predictions for the functional effects of amino acid insertions/deletions in proteins

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU862

21 January 2018

The Ka/Ks ratio: diagnosing the form of sequence evolution

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU862

21 January 2018

The UCSC Table Browser data retrieval tool

1 reference

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21 January 2018

A general framework for estimating the relative pathogenicity of human genetic variants

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU862

21 January 2018

Automated inference of molecular mechanisms of disease from amino acid substitutions.

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU862

21 January 2018

The functional spectrum of low-frequency coding variation

1 reference

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21 January 2018

A map of human genome variation from population-scale sequencing

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU862

21 January 2018

Natural genetic variation caused by small insertions and deletions in the human genome

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU862

21 January 2018

A meta-analysis of nonsense mutations causing human genetic disease.

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU862

21 January 2018

MutPred Splice: machine learning-based prediction of exonic variants that disrupt splicing

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU862

21 January 2018

A rule for termination-codon position within intron-containing genes: when nonsense affects RNA abundance

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU862

21 January 2018

Predicting deleterious amino acid substitutions

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU862

21 January 2018

Detection of nonneutral substitution rates on mammalian phylogenies

1 reference

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21 January 2018

HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment

1 reference

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21 January 2018

Estimating the support of a high-dimensional distribution

1 reference

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21 January 2018

The Human Gene Mutation Database: building a comprehensive mutation repository for clinical and molecular genetics, diagnostic testing and personalized genomic medicine

1 reference

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21 January 2018

Exosome-mediated recognition and degradation of mRNAs lacking a termination codon

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU862

21 January 2018

SPINE-D: accurate prediction of short and long disordered regions by a single neural-network based method

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU862

21 January 2018

Impact of human pathogenic micro-insertions and micro-deletions on post-transcriptional regulation

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU862

21 January 2018

DDIG-in: discriminating between disease-associated and neutral non-frameshifting micro-indels

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU862

21 January 2018

Ranking insertion, deletion and nonsense mutations based on their effect on genetic information

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU862

21 January 2018

Performance of mutation pathogenicity prediction methods on missense variants

1 reference

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21 January 2018

Identifiers

10.1093/BIOINFORMATICS/BTU862

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/25573915

DBLP publication ID

journals/bioinformatics/FolkmanYLSSMCLZ15

1 reference

DBLP Dataset 2021-01-02

28 January 2021

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

18 December 2017

http://europepmc.org/abstract/MED/25573915

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