(Q46063708)

19 December 2017

title

Functional analysis of hairpin ribozyme active site architecture (English)

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19 December 2017

author name string

Joseph W Cottrell

series ordinal

1

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19 December 2017

Yaroslav I Kuzmin

series ordinal

2

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19 December 2017

Martha J Fedor

series ordinal

3

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19 December 2017

language of work or name

English

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publication date

9 March 2007

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19 December 2017

Journal of Biological Chemistry

number of pages

10

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based on heuristic

inferred from page(s)

published in

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19 December 2017

volume

282

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19 December 2017

issue

18

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19 December 2017

page(s)

13498-13507

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19 December 2017

Structure and function of the hairpin ribozyme

cites work

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M700451200

Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis

21 January 2018

1 reference

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Transition state stabilization by a catalytic RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M700451200

Conformational heterogeneity at position U37 of an all-RNA hairpin ribozyme with implications for metal binding and the catalytic structure of the S-turn

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M700451200

Water in the active site of an all-RNA hairpin ribozyme and effects of Gua8 base variants on the geometry of phosphoryl transfer

21 January 2018

1 reference

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The catalytic diversity of RNAs

21 January 2018

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https://api.crossref.org/works/10.1074%2FJBC.M700451200

RNA catalytic properties of the minimum (-)sTRSV sequence

21 January 2018

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https://api.crossref.org/works/10.1074%2FJBC.M700451200

Entropic Contributions to Rate Accelerations in Enzymic and Intramolecular Reactions and the Chelate Effect

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M700451200

Rescue of an abasic hairpin ribozyme by cationic nucleobases: evidence for a novel mechanism of RNA catalysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M700451200

Tertiary structure stabilization promotes hairpin ribozyme ligation

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M700451200

Role of an active site adenine in hairpin ribozyme catalysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M700451200

Role of an active site guanine in hairpin ribozyme catalysis probed by exogenous nucleobase rescue

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M700451200

Stability of hairpin ribozyme tertiary structure is governed by the interdomain junction

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M700451200

Tertiary structure formation in the hairpin ribozyme monitored by fluorescence resonance energy transfer

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M700451200

The folding of the hairpin ribozyme: dependence on the loops and the junction

21 January 2018

1 reference

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Tertiary structure stability of the hairpin ribozyme in its natural and minimal forms: different energetic contributions from a ribose zipper motif

21 January 2018

1 reference

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Enzymatic oligoribonucleotide synthesis with T4 RNA ligase

21 January 2018

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Kinetics and thermodynamics of intermolecular catalysis by hairpin ribozymes

21 January 2018

1 reference

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Importance of specific nucleotides in the folding of the natural form of the hairpin ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M700451200

Energetics of hydrogen bond networks in RNA: hydrogen bonds surrounding G+1 and U42 are the major determinants for the tertiary structure stability of the hairpin ribozyme

21 January 2018

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Improved free-energy parameters for predictions of RNA duplex stability

21 January 2018

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Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

21 January 2018

1 reference

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Peripheral regions of natural hammerhead ribozymes greatly increase their self-cleavage activity

21 January 2018

1 reference

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Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity

21 January 2018

1 reference

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Tertiary contacts distant from the active site prime a ribozyme for catalysis

21 January 2018

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A kinetic and thermodynamic framework for the hammerhead ribozyme reaction

21 January 2018

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Ribozyme recognition of RNA by tertiary interactions with specific ribose 2′-OH groups

21 January 2018

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Energetics and cooperativity of tertiary hydrogen bonds in RNA structure

21 January 2018

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Base and sugar requirements for RNA cleavage of essential nucleoside residues in internal loop B of the hairpin ribozyme: implications for secondary structure

21 January 2018

1 reference

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Nucleotide analog interference mapping of the hairpin ribozyme: implications for secondary and tertiary structure formation.

21 January 2018

1 reference

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Stabilizing effects of the RNA 2'-substituent: crystal structure of an oligodeoxynucleotide duplex containing 2'-O-methylated adenosines

21 January 2018

1 reference

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Novel guanosine requirement for catalysis by the hairpin ribozyme

21 January 2018

1 reference

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21 January 2018

Identifiers

DOI

10.1074/JBC.M700451200

1 reference

19 December 2017

PubMed ID

17351263

1 reference

19 December 2017