(Q46448751)

English

High resolution structures of p-aminobenzamidine- and benzamidine-VIIa/soluble tissue factor: unpredicted conformation of the 192-193 peptide bond and mapping of Ca2+, Mg2+, Na+, and Zn2+ sites in factor VIIa

scientific article published on 6 June 2006

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scholarly article

1 reference

Europe PubMed Central

22 December 2017

http://europepmc.org/abstract/MED/16757484

High resolution structures of p-aminobenzamidine- and benzamidine-VIIa/soluble tissue factor: unpredicted conformation of the 192-193 peptide bond and mapping of Ca2+, Mg2+, Na+, and Zn2+ sites in factor VIIa (English)

1 reference

Europe PubMed Central

22 December 2017

http://europepmc.org/abstract/MED/16757484

author name string

S Paul Bajaj

1

1 reference

Europe PubMed Central

22 December 2017

http://europepmc.org/abstract/MED/16757484

Amy E Schmidt

2

1 reference

Europe PubMed Central

22 December 2017

http://europepmc.org/abstract/MED/16757484

Sayeh Agah

3

1 reference

Europe PubMed Central

22 December 2017

http://europepmc.org/abstract/MED/16757484

Madhu S Bajaj

4

1 reference

Europe PubMed Central

22 December 2017

http://europepmc.org/abstract/MED/16757484

Kaillathe Padmanabhan

5

1 reference

Europe PubMed Central

22 December 2017

http://europepmc.org/abstract/MED/16757484

language of work or name

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publication date

6 June 2006

1 reference

Europe PubMed Central

22 December 2017

http://europepmc.org/abstract/MED/16757484

Journal of Biological Chemistry

1 reference

Europe PubMed Central

22 December 2017

http://europepmc.org/abstract/MED/16757484

281

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Europe PubMed Central

22 December 2017

http://europepmc.org/abstract/MED/16757484

34

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Europe PubMed Central

22 December 2017

http://europepmc.org/abstract/MED/16757484

24873-24888

1 reference

Europe PubMed Central

22 December 2017

http://europepmc.org/abstract/MED/16757484

Characterization of a cDNA coding for human factor VII

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Nucleotide sequence of the gene coding for human factor VII, a vitamin K-dependent protein participating in blood coagulation

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

The coagulation cascade: initiation, maintenance, and regulation

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Kinetics of human factor VII activation.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Crystal structure of the extracellular region of human tissue factor

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

The crystal structure of the extracellular domain of human tissue factor refined to 1.7 A resolution

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

The mechanism of an inhibitory antibody on TF-initiated blood coagulation revealed by the crystal structures of human tissue factor, Fab 5G9 and TF.G9 complex

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Tissue factor and its extracellular soluble domain: the relationship between intermolecular association with factor VIIa and enzymatic activity of the complex

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

The crystal structure of the complex of blood coagulation factor VIIa with soluble tissue factor

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Identification of a calcium binding site in the protease domain of human blood coagulation factor VII: evidence for its role in factor VII-tissue factor interaction

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Two different Ca2+ ion binding sites in factor VIIa and in des(1-38) factor VIIa

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Magnesium and manganese ions accelerate tissue factor-induced coagulation independently of factor IX.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Effect of magnesium contamination in evacuated blood collection tubes on the prothrombin time test and ISI calibration using recombinant human thromboplastin and different types of coagulometer

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Structure of human factor VIIa and its implications for the triggering of blood coagulation

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Crystal structure of active site-inhibited human coagulation factor VIIa (des-Gla)

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Structure of extracellular tissue factor complexed with factor VIIa inhibited with a BPTI mutant

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Crystal structures of uninhibited factor VIIa link its cofactor and substrate-assisted activation to specific interactions

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

A selective, slow binding inhibitor of factor VIIa binds to a nonstandard active site conformation and attenuates thrombus formation in vivo

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Design of selective phenylglycine amide tissue factor/factor VIIa inhibitors

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Binding of Zn2+ to a Ca2+ loop allosterically attenuates the activity of factor VIIa and reduces its affinity for tissue factor

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Structure of human des(1-45) factor Xa at 2.2 A resolution

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

The molecular environment of the Na+ binding site of thrombin

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Thermodynamic linkage between the S1 site, the Na+ site, and the Ca2+ site in the protease domain of human activated protein C (APC). Sodium ion in the APC crystal structure is coordinated to four carbonyl groups from two separate loops

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Na+ site in blood coagulation factor IXa: effect on catalysis and factor VIIIa binding

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Molecular dissection of Na+ binding to thrombin.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Coagulation factor IXa: the relaxed conformation of Tyr99 blocks substrate binding

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Effector sites in the three-dimensional structure of mammalian sperm beta-acrosin

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

The refined crystal structure of bovine beta-trypsin at 1.8 A resolution. II. Crystallographic refinement, calcium binding site, benzamidine binding site and active site at pH 7.0

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Mutation of surface residues to promote crystallization of activated factor XI as a complex with benzamidine: an essential step for the iterative structure-based design of factor XI inhibitors

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Expression, crystallization, and three-dimensional structure of the catalytic domain of human plasma kallikrein

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

The N-terminal epidermal growth factor-like domain in factor IX and factor X represents an important recognition motif for binding to tissue factor

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Intrinsic versus extrinsic coagulation. Kinetic considerations

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Processing of X-ray diffraction data collected in oscillation mode

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Checking your imagination: applications of the free R value

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Improved methods for building protein models in electron density maps and the location of errors in these models

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Crystal structure of Mg2+- and Ca2+-bound Gla domain of factor IX complexed with binding protein

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

The extended interactions and Gla domain of blood coagulation factor Xa

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

The Ca2+ ion and membrane binding structure of the Gla domain of Ca-prothrombin fragment 1

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Magnesium iodide-4,4'-bipyridine-water (1/3/4) and strontium iodide-4,4'-bipyridine-propan-1-ol (1/2.5/2).

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Serum ionized magnesium levels and ionized calcium-to-magnesium ratios in adult patients with sickle cell anemia.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Prothrombinase assembly and S1 site occupation restore the catalytic activity of FXa impaired by mutation at the sodium-binding site

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Design, synthesis, and structure-activity relationship of a new class of amidinophenylurea-based factor VIIa inhibitors.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

The proteasome inhibitor PS-341 sensitizes neoplastic cells to TRAIL-mediated apoptosis by reducing levels of c-FLIP.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Selective and orally bioavailable phenylglycine tissue factor/factor VIIa inhibitors.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Structure-based drug design of pyrazinone antithrombotics as selective inhibitors of the tissue factor VIIa complex.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

The structure of the superantigen exfoliative toxin A suggests a novel regulation as a serine protease

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

The structure of Staphylococcus aureus epidermolytic toxin A, an atypic serine protease, at 1.7 A resolution

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

The crystal structure of exfoliative toxin B: a superantigen with enzymatic activity

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Crystal structure of wild-type human thrombin in the Na+-free state.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Energetic and structural consequences of perturbing Gly-193 in the oxyanion hole of serine proteases

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

The tissue factor region that interacts with substrates factor IX and Factor X.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Importance of factor VIIa Gla-domain residue Arg-36 for recognition of the macromolecular substrate factor X Gla-domain

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

First epidermal growth factor-like domain of human blood coagulation factor IX is required for its activation by factor VIIa/tissue factor but not by factor XIa.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

The tissue factor/factor VIIa/factor Xa complex: a model built by docking and site-directed mutagenesis

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

An all-atom solution-equilibrated model for human extrinsic blood coagulation complex (sTF-VIIa-Xa): a protein-protein docking and molecular dynamics refinement study.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Exosite-driven substrate specificity and function in coagulation

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

MDB: the Metalloprotein Database and Browser at The Scripps Research Institute

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

High throughput substrate specificity profiling of serine and cysteine proteases using solution-phase fluorogenic peptide microarrays

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Profiling serine protease substrate specificity with solution phase fluorogenic peptide microarrays

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M509971200

21 January 2018

Structural basis of the activation and action of trypsin

1 reference

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21 January 2018

Structural design and molecular evolution of a cytokine receptor superfamily

1 reference

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21 January 2018

Identifiers

10.1074/JBC.M509971200

1 reference

Europe PubMed Central

22 December 2017

http://europepmc.org/abstract/MED/16757484

1 reference

Europe PubMed Central

22 December 2017

http://europepmc.org/abstract/MED/16757484

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