(Q46672696)

24 December 2017

title

Variable gap penalty for protein sequence-structure alignment (English)

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24 December 2017

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2

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24 December 2017

Andrej Šali

series ordinal

4

object named as

Andrej Sali

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author name string

M S Madhusudhan

series ordinal

1

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24 December 2017

Roberto Sanchez

series ordinal

3

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24 December 2017

publication date

19 January 2006

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24 December 2017

Protein Engineering Design and Selection

published in

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24 December 2017

volume

19

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24 December 2017

page(s)

129-133

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24 December 2017

issue

3

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24 December 2017

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZJ005

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Evaluation and improvements in the automatic alignment of protein sequences.

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The Protein Data Bank

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A sequence alignment algorithm with an arbitrary gap penalty function.

21 January 2018

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https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZJ005

A comparison of scoring functions for protein sequence profile alignment.

21 January 2018

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https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZJ005

Frequency of gaps observed in a structurally aligned protein pair database suggests a simple gap penalty function

21 January 2018

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https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZJ005

Amino acid substitution matrices

21 January 2018

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https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZJ005

Comparative protein structure modeling of genes and genomes

21 January 2018

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DBAli: a database of protein structure alignments.

21 January 2018

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Reliability of assessment of protein structure prediction methods.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZJ005

Alignment of protein sequences by their profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZJ005

Local sequence alignments with monotonic gap penalties.

21 January 2018

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https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZJ005

A decade of CASP: progress, bottlenecks and prognosis in protein structure prediction.

21 January 2018

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A general method applicable to the search for similarities in the amino acid sequence of two proteins

21 January 2018

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MODBASE: a database of annotated comparative protein structure models and associated resources

21 January 2018

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Comparative protein modelling by satisfaction of spatial restraints

21 January 2018

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Derivation of rules for comparative protein modeling from a database of protein structure alignments

21 January 2018

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On the Theory and Computation of Evolutionary Distances

21 January 2018

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FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties

21 January 2018

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https://api.crossref.org/works/10.1093%2FPROTEIN%2FGZJ005

Identification of common molecular subsequences

21 January 2018

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Within the twilight zone: a sensitive profile-profile comparison tool based on information theory.

21 January 2018

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21 January 2018

Identifiers

DOI

10.1093/PROTEIN/GZJ005

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24 December 2017

PubMed ID

16423846

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24 December 2017