(Q46727149)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23039613%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

title

Sequence-dependent thermodynamics of a coarse-grained DNA model (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23039613%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

0 references

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23039613%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

Thomas E. Ouldridge

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23039613%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

Jonathan Doye

series ordinal

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23039613%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

Ard Louis

series ordinal

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23039613%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

1

Petr Šulc

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23039613%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

4

Lorenzo Rovigatti

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23039613%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

language of work or name

English

0 references

publication date

1 October 2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23039613%20AND%20SRC:MED&resulttype=core&format=json

Journal of Chemical Physics

9 March 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23039613%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

volume

137

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23039613%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

issue

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23039613%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

page(s)

135101

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23039613%20AND%20SRC:MED&resulttype=core&format=json

Molecular computation of solutions to combinatorial problems

9 March 2020

cites work

1 reference

Mechanism for a directional, processive, and reversible DNA motor.

21 January 2018

1 reference

Design and self-assembly of two-dimensional DNA crystals

21 January 2018

1 reference

Folding DNA to create nanoscale shapes and patterns

21 January 2018

1 reference

Nature and magnitude of aromatic stacking of nucleic acid bases

21 January 2018

1 reference

The relative flexibility of B-DNA and A-RNA duplexes: database analysis

21 January 2018

1 reference

Comparison of intrinsic stacking energies of ten unique dinucleotide steps in A-RNA and B-DNA duplexes. Can we determine correct order of stability by quantum-chemical calculations?

21 January 2018

1 reference

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

21 January 2018

1 reference

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

21 January 2018

1 reference

Frontiers in molecular dynamics simulations of DNA.

21 January 2018

1 reference

A mesoscale model of DNA and its renaturation

21 January 2018

1 reference

Lattice model of oligonucleotide hybridization in solution. I. Model and thermodynamics.

21 January 2018

1 reference

Moving beyond Watson-Crick models of coarse grained DNA dynamics.

21 January 2018

1 reference

Mesoscopic modeling for nucleic acid chain dynamics.

21 January 2018

1 reference

A coarse grain model for DNA.

21 January 2018

1 reference

Heat conductivity of DNA double helix

21 January 2018

1 reference

A Coarse Grained Model for Atomic-Detailed DNA Simulations with Explicit Electrostatics

21 January 2018

1 reference

Molecular renormalization group coarse-graining of polymer chains: application to double-stranded DNA.

21 January 2018

1 reference

From rigid base pairs to semiflexible polymers: coarse-graining DNA.

21 January 2018

1 reference

DNA nanotweezers studied with a coarse-grained model of DNA.

21 January 2018

1 reference

The effect of topology on the structure and free energy landscape of DNA kissing complexes.

21 January 2018

1 reference

DNA sequence-dependent deformability deduced from protein-DNA crystal complexes

21 January 2018

1 reference

Sequence dependence of DNA bending rigidity

21 January 2018

1 reference

An A-DNA triplet code: thermodynamic rules for predicting A- and B-DNA

21 January 2018

1 reference

Molecular origins of DNA flexibility: sequence effects on conformational and mechanical properties.

21 January 2018

1 reference

A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

21 January 2018

1 reference

The thermodynamics of DNA structural motifs

21 January 2018

1 reference

NUPACK: Analysis and design of nucleic acid systems

21 January 2018

1 reference

21 January 2018

Bioinformatics. Preface.

1 reference

DINAMelt web server for nucleic acid melting prediction

21 January 2018

1 reference

MELTING, computing the melting temperature of nucleic acid duplex.

21 January 2018

1 reference

Theory of ``Melting'' of the Helical Form in Double Chains of the DNA Type

21 January 2018

1 reference

A unified Poland-Scheraga model of oligo- and polynucleotide DNA melting: salt effects and predictive power

21 January 2018

1 reference

Sequence-dependent base pair opening in DNA double helix

21 January 2018

1 reference

Sequence sensitivity of breathing dynamics in heteropolymer DNA.

21 January 2018

1 reference

Breathing dynamics in heteropolymer DNA.

21 January 2018

1 reference

Single-molecule derivation of salt dependent base-pair free energies in DNA

21 January 2018

1 reference

Direct observation of multiple pathways of single-stranded DNA stretching.

21 January 2018

1 reference

The role of collective motion in examples of coarsening and self-assembly.

21 January 2018

1 reference

Terminal base pairs of oligodeoxynucleotides: imino proton exchange and fraying

21 January 2018

1 reference

Control of DNA strand displacement kinetics using toehold exchange.

21 January 2018

1 reference

Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules

21 January 2018

1 reference

Stretching single-stranded DNA: interplay of electrostatic, base-pairing, and base-pair stacking interactions

21 January 2018

1 reference

Topological constraints in nucleic acid hybridization kinetics

21 January 2018

1 reference

Triggered amplification by hybridization chain reaction

21 January 2018

1 reference

Coordinated chemomechanical cycles: a mechanism for autonomous molecular motion.

21 January 2018

1 reference

Programming biomolecular self-assembly pathways

21 January 2018

1 reference

A programmable molecular robot.

21 January 2018

1 reference

DNA hairpins: fuel for autonomous DNA devices

21 January 2018

1 reference

Quantitative Prediction of the Phase Diagram of DNA-Functionalized Nanosized Colloids

21 January 2018

1 reference

Structure, Energetics, and Dynamics of the Nucleic Acid Base Pairs: NonempiricalAb InitioCalculations

21 January 2018

1 reference

Nature of Base Stacking: Reference Quantum-Chemical Stacking Energies in Ten Unique B-DNA Base-Pair Steps

21 January 2018

1 reference

Accurate Interaction Energies of Hydrogen-Bonded Nucleic Acid Base Pairs

21 January 2018

1 reference

An autonomous polymerization motor powered by DNA hybridization

21 January 2018

1 reference