(Q24814683)

4 July 2017

title

Topological constraints in nucleic acid hybridization kinetics (English)

1 reference

4 July 2017

6

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Justin S Bois

object named as

Justin S Bois

1

0 references

Zhen-Gang Wang

5

object named as

Zhen-Gang Wang

1 reference

4 July 2017

Suvir Venkataraman

2

1 reference

4 July 2017

Harry M T Choi

3

1 reference

4 July 2017

Andrew J Spakowitz

4

1 reference

4 July 2017

Niles A Pierce

6

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4 July 2017

language of work or name

English

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publication date

25 July 2005

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4 July 2017

published in

Nucleic Acids Research

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4 July 2017

volume

33

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4 July 2017

issue

13

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4 July 2017

page(s)

4090-4095

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Paradigms for computational nucleic acid design

4 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180668

A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180668

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180668

The equilibrium partition function and base pair binding probabilities for RNA secondary structure

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180668

RNA loop-loop interactions as dynamic functional motifs.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180668

RNA hairpin-folding kinetics

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180668

Progression of a loop-loop complex to a four-way junction is crucial for the activity of a regulatory antisense RNA

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180668

Modeling RNA folding paths with pseudoknots: application to hepatitis delta virus ribozyme

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180668

RNA folding at elementary step resolution

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180668

An unusual structure formed by antisense-target RNA binding involves an extended kissing complex with a four-way junction and a side-by-side helical alignment

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180668

RNA folding energy landscapes.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180668

Theory of protein folding: the energy landscape perspective

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180668

Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180668

RNA chaperones and the RNA folding problem

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180668

A simple topological method for describing stereoisomers of DNA catenanes and knots

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180668

Nucleic acid junctions and lattices

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180668

Biochemical topology: applications to DNA recombination and replication

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180668

Description of the topological entanglement of DNA catenanes and knots by a powerful method involving strand passage and recombination

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180668

Antisense RNA control of plasmid R1 replication. The dominant product of the antisense rna-mrna binding is not a full RNA duplex.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1180668

Structural analysis of late intermediate complex formed between plasmid ColIb-P9 Inc RNA and its target RNA. How does a single antisense RNA repress translation of two genes at different rates?

30 May 2018

1 reference

12 December 2020

Sequence dependent rigidity of single stranded DNA

1 reference

12 December 2020

Four-way junctions in antisense RNA-mRNA complexes involved in plasmid replication control: a common theme?

1 reference

12 December 2020

DNA Fuel for Free-Running Nanomachines

1 reference

12 December 2020

Nucleic Acid Nanostructures and Topology

1 reference

12 December 2020

Statistics of branching and hairpin helices for the dAT copolymer

1 reference

12 December 2020

Kissing and RNA stability in antisense control of plasmid replication

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKI721

1 reference

4 July 2017

1 reference

4 July 2017

1 reference