(Q34971727)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10639133%20AND%20SRC:MED&resulttype=core&format=json

3 November 2019

title

RNA folding energy landscapes (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10639133%20AND%20SRC:MED&resulttype=core&format=json

3 November 2019

1 reference

1

1 reference

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3 November 2019

2

K A Dill

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10639133%20AND%20SRC:MED&resulttype=core&format=json

3 November 2019

language of work or name

English

0 references

publication date

1 January 2000

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10639133%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

3 November 2019

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10639133%20AND%20SRC:MED&resulttype=core&format=json

3 November 2019

volume

97

1 reference

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3 November 2019

issue

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10639133%20AND%20SRC:MED&resulttype=core&format=json

3 November 2019

page(s)

646-651

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10639133%20AND%20SRC:MED&resulttype=core&format=json

3 November 2019

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15384

Magnesium-dependent folding of self-splicing RNA: exploring the link between cooperativity, thermodynamics, and kinetics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15384

On the role of magnesium ions in RNA stability

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15384

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15384

Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15384

RNA folding causes secondary structure rearrangement

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15384

Native secondary structure formation in RNA may be a slave to tertiary folding

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15384

Complex formation of the spinach chloroplast psbA mRNA 5' untranslated region with proteins is dependent on the RNA structure

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15384

Theory of protein folding: the energy landscape perspective

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15384

Effects of Mg2+ and the 2' OH of guanosine on steps required for substrate binding and reactivity with the Tetrahymena ribozyme reveal several local folding transitions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15384

From Levinthal to pathways to funnels

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15384

Isolation of a local tertiary folding transition in the context of a globally folded RNA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15384

Funnels, pathways, and the energy landscape of protein folding: a synthesis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15384

Determination of RNA structure and thermodynamics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15384

Principles of protein folding--a perspective from simple exact models.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15384

RNA chaperones and the RNA folding problem

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15384

Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15384

Spin glasses and the statistical mechanics of protein folding

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15384

On finding all suboptimal foldings of an RNA molecule

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15384

8 July 2018

RNA structure prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15384

The equilibrium partition function and base pair binding probabilities for RNA secondary structure

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15384

Formation of metastable RNA structures by sequential folding during transcription: time-resolved structural analysis of potato spindle tuber viroid (-)-stranded RNA by temperature-gradient gel electrophoresis

8 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.97.2.646

RNA Folding at Millisecond Intervals by Synchrotron Hydroxyl Radical Footprinting

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.97.2.646

Folding intermediates of a self-splicing RNA: mispairing of the catalytic core

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.97.2.646

Theory of the Phase Transition between Helix and Random Coil in Polypeptide Chains

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.97.2.646

Stabilization of RNA structure by Mg ions. Specific and non-specific effects.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.97.2.646

Protein folding mechanisms and the multidimensional folding funnel.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15384

Folding of RNA involves parallel pathways

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=15384

Intermediates and kinetic traps in the folding of a large ribozyme revealed by circular dichroism and UV absorbance spectroscopies and catalytic activity

26 October 2018

1 reference

12 December 2020

Folding of an mRNA pseudoknot required for stop codon readthrough: effects of mono- and divalent ions on stability

1 reference

12 December 2020

Kinetic intermediates in RNA folding

1 reference

12 December 2020

Thermodynamics of folding a pseudoknotted mRNA fragment

1 reference

12 December 2020

Predicting thermodynamic properties of RNA

1 reference

12 December 2020

Kinetic intermediates trapped by native interactions in RNA folding

1 reference

12 December 2020

The parallel universe of RNA folding

1 reference

12 December 2020

Fast folding mutants of the Tetrahymena group I ribozyme reveal a rugged folding energy landscape

1 reference

12 December 2020

Melting and chemical modification of a cyclized self-splicing group I intron: similarity of structures in 1 M Na+, in 10 mM Mg2+, and in the presence of substrate

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.97.2.646

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10639133%20AND%20SRC:MED&resulttype=core&format=json

3 November 2019

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10639133%20AND%20SRC:MED&resulttype=core&format=json

3 November 2019

1 reference