(Q46753063)

24 December 2017

title

On the Robustness to Gene Tree Estimation Error (or lack thereof) of Coalescent-Based Species Tree Methods (English)

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24 December 2017

2

Tandy Warnow

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24 December 2017

author name string

Sebastien Roch

series ordinal

1

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24 December 2017

publication date

25 March 2015

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24 December 2017

published in

Systematic Biology

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24 December 2017

volume

64

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24 December 2017

issue

4

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24 December 2017

page(s)

663-676

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24 December 2017

Identifying the rooted species tree from the distribution of unrooted gene trees under the coalescent.

cites work

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV016

Quartet inference from SNP data under the coalescent model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV016

Fast and consistent estimation of species trees using supermatrix rooted triples

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV016

Properties of consensus methods for inferring species trees from gene trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV016

Gene tree discordance, phylogenetic inference and the multispecies coalescent

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV016

Is a new and general theory of molecular systematics emerging?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV016

Rooted triple consensus and anomalous gene trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV016

Phylogenetic analysis at deep timescales: unreliable gene trees, bypassed hidden support, and the coalescence/concatalescence conundrum

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV016

Bayesian inference of species trees from multilocus data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV016

Incomplete lineage sorting patterns among human, chimpanzee, and orangutan suggest recent orangutan speciation and widespread selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV016

Whole-genome analyses resolve early branches in the tree of life of modern birds

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV016

STEM: species tree estimation using maximum likelihood for gene trees under coalescence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV016

Inconsistency of phylogenetic estimates from concatenated data under coalescence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV016

BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV016

The accuracy of species tree estimation under simulation: a comparison of methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV016

BEST: Bayesian estimation of species trees under the coalescent model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV016

Genome size differentiates co-occurring populations of the planktonic diatom Ditylum brightwellii (Bacillariophyta)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV016

A maximum pseudo-likelihood approach for estimating species trees under the coalescent model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV016

Estimating species phylogenies using coalescence times among sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV016

Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV016

A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV016

ASTRAL: genome-scale coalescent-based species tree estimation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV016

Parametric phylogenetics?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV016

Using max cut to enhance rooted trees consistency

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV016

Quartets MaxCut: a divide and conquer quartets algorithm

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV016

Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV016

Maximum likelihood supertrees.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV016

Links between maximum likelihood and maximum parsimony under a simple model of site substitution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV016

Phylotranscriptomic analysis of the origin and early diversification of land plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV016

Phylogenetic analyses of cyanobacterial genomes: quantification of horizontal gene transfer events

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYV016

21 January 2018

Identifiers

DOI

10.1093/SYSBIO/SYV016

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24 December 2017

PubMed ID

25813358

1 reference

24 December 2017