(Q46871971)

26 December 2017

title

Unfolding dynamics of the protein ubiquitin: insight from simulation (English)

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26 December 2017

author name string

Shubhra Ghosh Dastidar

series ordinal

1

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26 December 2017

Chaitali Mukhopadhyay

series ordinal

2

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26 December 2017

language of work or name

English

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publication date

29 November 2005

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26 December 2017

published in

Physical Review E

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26 December 2017

volume

72

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26 December 2017

issue

5 Pt 1

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26 December 2017

page(s)

051928

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26 December 2017

Protein folding mechanisms: new methods and emerging ideas

cites work

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.72.051928

Early events in protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.72.051928

Long timescale simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.72.051928

Is there a unifying mechanism for protein folding?

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.72.051928

Increasing temperature accelerates protein unfolding without changing the pathway of unfolding

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.72.051928

Protein folding and the organization of the protein topology universe.

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.72.051928

Micromixer-based time-resolved NMR: applications to ubiquitin protein conformation

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.72.051928

Characterization of a partially denatured state of a protein by two-dimensional NMR: reduction of the hydrophobic interactions in ubiquitin

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.72.051928

Heteronuclear three-dimensional NMR spectroscopy of a partially denatured protein: the A-state of human ubiquitin.

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.72.051928

Exploring sequence/folding space: folding studies on multiple hydrophobic core mutants of ubiquitin.

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.72.051928

Absolute comparison of simulated and experimental protein-folding dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.72.051928

Heat capacity changes upon burial of polar and nonpolar groups in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.72.051928

Selective excitation of native fluctuations during thermal unfolding simulations: horse heart cytochrome c as a case study

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.72.051928

Peptide folding simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.72.051928

Transition states for protein folding have native topologies despite high structural variability

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.72.051928

Beta-hairpin folding mechanism of a nine-residue peptide revealed from molecular dynamics simulations in explicit water

21 January 2018

1 reference

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Fast protein folding on downhill energy landscape

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.72.051928

Small-world view of the amino acids that play a key role in protein folding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.72.051928

Kinetics of unfolding and folding from amide hydrogen exchange in native ubiquitin

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.72.051928

Comparison of simple potential functions for simulating liquid water

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.72.051928

All-atom empirical potential for molecular modeling and dynamics studies of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.72.051928

Structure, dynamics, and energetics of water at the surface of a small globular protein: A molecular dynamics simulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.72.051928

Identification and characterization of the unfolding transition state of chymotrypsin inhibitor 2 by molecular dynamics simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.72.051928

Energetics of protein structure and folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.72.051928

Molecular dynamics simulations of protein unfolding and limited refolding: characterization of partially unfolded states of ubiquitin in 60% methanol and in water

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.72.051928

10.1103/PHYSREVE.72.051928

21 January 2018

Identifiers

DOI

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26 December 2017

ADS bibcode

2005PhRvE..72e1928D

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26 December 2017