(Q46906037)

26 December 2017

title

Identification of novel biomass-degrading enzymes from genomic dark matter: Populating genomic sequence space with functional annotation (English)

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26 December 2017

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8

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26 December 2017

Hans-Peter Klenk

10

Hans-Peter Klenk

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26 December 2017

Jeff L Froula

2

Jeff Froula

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26 December 2017

Erik R Hawley

5

Erik R Hawley

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26 December 2017

Hailan Piao

1

Hailan Piao

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26 December 2017

Matthias Hess

11

Matthias Hess

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26 December 2017

author name string

Changbin Du

3

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26 December 2017

Tae-Wan Kim

4

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26 December 2017

Stefan Bauer

6

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26 December 2017

Zhong Wang

7

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26 December 2017

Douglas S Clark

9

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26 December 2017

publication date

28 May 2014

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26 December 2017

Biotechnology and Bioengineering

published in

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26 December 2017

volume

111

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26 December 2017

issue

8

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26 December 2017

page(s)

1550-1565

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26 December 2017

Complete genome sequence of Leadbetterella byssophila type strain (4M15).

cites work

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Predicting protein function by machine learning on amino acid sequences--a critical evaluation

21 January 2018

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Cloning and recombinant expression of a cellulase from the cellulolytic strain Streptomyces sp. G12 isolated from compost.

21 January 2018

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Bacteroides finegoldii sp. nov., isolated from human faeces.

21 January 2018

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Evidence for synergy between family 2b carbohydrate binding modules in Cellulomonas fimi xylanase 11A

21 January 2018

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Application of SVM to predict membrane protein types

21 January 2018

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The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

21 January 2018

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Effect of linker length and dockerin position on conversion of a Thermobifida fusca endoglucanase to the cellulosomal mode

21 January 2018

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New lineage of filamentous, spore-forming, gram-positive bacteria from soil

21 January 2018

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Assembling a cellulase cocktail and a cellodextrin transporter into a yeast host for CBP ethanol production

21 January 2018

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Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21).

21 January 2018

1 reference

Expression and purification of two Family GH31 α-glucosidases from Bacteroides thetaiotaomicron.

21 January 2018

1 reference

Dyadobacter fermentans gen. nov., sp. nov., a novel gram-negative bacterium isolated from surface-sterilized Zea mays stems

21 January 2018

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Proteiniphilum acetatigenes gen. nov., sp. nov., from a UASB reactor treating brewery wastewater

21 January 2018

1 reference

Biochemical analysis of interactions between outer membrane proteins that contribute to starch utilization by Bacteroides thetaiotaomicron

21 January 2018

1 reference

Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4(T)).

21 January 2018

1 reference

Cellulase activities in biomass conversion: measurement methods and comparison

21 January 2018

1 reference

SUPERFAMILY 1.75 including a domain-centric gene ontology method

21 January 2018

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Complete genome sequence of the cellulolytic thermophile Caldicellulosiruptor obsidiansis OB47T.

21 January 2018

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Locating proteins in the cell using TargetP, SignalP and related tools

21 January 2018

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A novel alkaline endoglucanase from an alkaliphilic Bacillus isolate: enzymatic properties, and nucleotide and deduced amino acid sequences

21 January 2018

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Protein function prediction: towards integration of similarity metrics

21 January 2018

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A single-molecule analysis reveals morphological targets for cellulase synergy

21 January 2018

1 reference

Compositional analysis of lignocellulosic materials: evaluation of methods used for sugar analysis of waste paper and straw

21 January 2018

1 reference

Genome Sequence of the White Koji Mold Aspergillus kawachii IFO 4308, Used for Brewing the Japanese Distilled Spirit Shochu

21 January 2018

1 reference

Global view of the Clostridium thermocellum cellulosome revealed by quantitative proteomic analysis

21 January 2018

1 reference

Re-annotation of protein-coding genes in 10 complete genomes of Neisseriaceae family by combining similarity-based and composition-based methods

21 January 2018

1 reference

Deduced amino acid sequence and possible catalytic residues of a thermostable, alkaline cellulase from an Alkaliphilic bacillus strain

21 January 2018

1 reference

Synthesis, regulation and utilization of lignocellulosic biomass

21 January 2018

1 reference

Stimulation of lignocellulosic biomass hydrolysis by proteins of glycoside hydrolase family 61: structure and function of a large, enigmatic family

21 January 2018

1 reference

Prevotella copri sp. nov. and Prevotella stercorea sp. nov., isolated from human faeces.

21 January 2018

1 reference

Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota

21 January 2018

1 reference

Metagenomic discovery of biomass-degrading genes and genomes from cow rumen

21 January 2018

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High-quality draft genome sequence of the Opitutaceae bacterium strain TAV1, a symbiont of the wood-feeding termite Reticulitermes flavipes

21 January 2018

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Practical screening of purified cellobiohydrolases and endoglucanases with α-cellulose and specification of hydrodynamics

21 January 2018

1 reference

Characterization of a novel endo-β-1,4-glucanase from Armillaria gemina and its application in biomass hydrolysis

21 January 2018

1 reference

An improved hidden Markov model for transmembrane protein detection and topology prediction and its applications to complete genomes.

21 January 2018

1 reference

Structure of a SusD Homologue, BT1043, Involved in Mucin O -Glycan Utilization in a Prominent Human Gut Symbiont † , ‡

21 January 2018

1 reference

Complete genome sequence of Spirosoma linguale type strain (1)

21 January 2018

1 reference

Complete genome sequence of Dyadobacter fermentans type strain (NS114)

21 January 2018

1 reference

Clustal W and Clustal X version 2.0

21 January 2018

1 reference

Dyadobacter soli sp. nov., a starch-degrading bacterium isolated from farm soil

21 January 2018

1 reference

Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing

21 January 2018

1 reference

A novel cellulase gene from the mulberry longicorn beetle, Apriona germari: gene structure, expression, and enzymatic activity

21 January 2018

1 reference

A comparison of profile hidden Markov model procedures for remote homology detection

21 January 2018

1 reference

CDD: conserved domains and protein three-dimensional structure

21 January 2018

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Novel Penicillium cellulases for total hydrolysis of lignocellulosics

21 January 2018

1 reference

The integrated microbial genomes system: an expanding comparative analysis resource

21 January 2018

1 reference

IMG: the Integrated Microbial Genomes database and comparative analysis system

21 January 2018

1 reference

Ethanol production from xylose in engineered Saccharomyces cerevisiae strains: current state and perspectives.

21 January 2018

1 reference

Gene context analysis in the Integrated Microbial Genomes (IMG) data management system

21 January 2018

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Characterization of Xyn10A, a highly active xylanase from the human gut bacterium Bacteroides xylanisolvens XB1A.

21 January 2018

1 reference

Tertiary structure and carbohydrate recognition by the chitin-binding domain of a hyperthermophilic chitinase from Pyrococcus furiosus

21 January 2018

1 reference

Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods

21 January 2018

1 reference

Cell-wall carbohydrates and their modification as a resource for biofuels

21 January 2018

1 reference

Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88

21 January 2018

1 reference

Cloning, characterization and phylogenetic relationships of cel5B, a new endoglucanase encoding gene from Thermobifida fusca

21 January 2018

1 reference

Prevalence of Ca²⁺-ATPase-mediated carbonate dissolution among cyanobacterial euendoliths

21 January 2018

1 reference

Discovery and structural characterization of a novel glycosidase family of marine origin

21 January 2018

1 reference

Bacteroides cellulosilyticus sp. nov., a cellulolytic bacterium from the human gut microbial community

21 January 2018

1 reference

Genomics of cellulosic biofuels

21 January 2018

1 reference

Parabacteroides johnsonii sp. nov., isolated from human faeces.

21 January 2018

1 reference

Operons in Escherichia coli: genomic analyses and predictions

21 January 2018

1 reference

The structural basis for the ligand specificity of family 2 carbohydrate-binding modules

21 January 2018

1 reference

Pfam: multiple sequence alignments and HMM-profiles of protein domains

21 January 2018

1 reference

Pfam: a comprehensive database of protein domain families based on seed alignments

21 January 2018

1 reference

Genome sequence of the cellulosome-producing mesophilic organism Clostridium cellulovorans 743B.

21 January 2018

1 reference

A genomic perspective on protein families

21 January 2018

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Spirosoma panaciterrae sp. nov., isolated from soil

21 January 2018

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Environmental and gut bacteroidetes: the food connection.

21 January 2018

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An oxidative enzyme boosting the enzymatic conversion of recalcitrant polysaccharides

21 January 2018

1 reference

An overview of statistical learning theory.

21 January 2018

1 reference

PRINTR: prediction of RNA binding sites in proteins using SVM and profiles.

21 January 2018

1 reference

Leadbetterella byssophila gen. nov., sp. nov., isolated from cotton-waste composts for the cultivation of oyster mushroom

21 January 2018

1 reference

Niastella koreensis gen. nov., sp. nov. and Niastella yeongjuensis sp. nov., novel members of the phylum Bacteroidetes, isolated from soil cultivated with Korean ginseng

21 January 2018

1 reference

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

21 January 2018

1 reference

Engineered thermostable fungal Cel6A and Cel7A cellobiohydrolases hydrolyze cellulose efficiently at elevated temperatures

21 January 2018

1 reference

cDNA cloning, expression, and enzymatic activity of a novel endogenous cellulase from the beetle Batocera horsfieldi

21 January 2018

1 reference

Reclassification of [Flavobacterium] ferrugineum as Terrimonas ferruginea gen. nov., comb. nov., and description of Terrimonas lutea sp. nov., isolated from soil

21 January 2018

1 reference

Identification of a novel gene for biosynthesis of a bacteroid-specific electron carrier menaquinone

21 January 2018

1 reference

Genome Sequence of the Cellulolytic Gliding Bacterium Cytophaga hutchinsonii

21 January 2018

1 reference

Outlook for cellulase improvement: screening and selection strategies

21 January 2018

1 reference

21 January 2018

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Combinatorial binding predicts spatio-temporal cis-regulatory activity

21 January 2018

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21 January 2018

Identifiers

DOI

10.1002/BIT.25250

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26 December 2017

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26 December 2017