(Q46952014)

26 December 2017

title

Microbial genomics, transcriptomics and proteomics: new discoveries in decomposition research using complementary methods (English)

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26 December 2017

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26 December 2017

Petr Baldrian

series ordinal

1

object named as

Petr Baldrian

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26 December 2017

language of work or name

English

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publication date

3 January 2014

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26 December 2017

Applied Microbiology and Biotechnology

published in

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26 December 2017

volume

98

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26 December 2017

issue

4

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26 December 2017

page(s)

1531-1537

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26 December 2017

Fungal degradation of wood: initial proteomic analysis of extracellular proteins of Phanerochaete chrysosporium grown on oak substrate

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Cellulose-degrading bacteria associated with the invasive woodwasp Sirex noctilio

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Quantitative proteomic analysis of lignocellulolytic enzymes by Phanerochaete chrysosporium on different lignocellulosic biomass

21 January 2018

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Soil eukaryotic functional diversity, a metatranscriptomic approach

21 January 2018

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Fungal laccases - occurrence and properties

21 January 2018

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Active and total microbial communities in forest soil are largely different and highly stratified during decomposition

21 January 2018

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Degradation of cellulose by basidiomycetous fungi

21 January 2018

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Oxidative cleavage of cellulose by fungal copper-dependent polysaccharide monooxygenases.

21 January 2018

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Functional metaproteome analysis of protein extracts from contaminated soil and groundwater

21 January 2018

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Phylogenetic distribution of potential cellulases in bacteria

21 January 2018

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The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

21 January 2018

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Metatranscriptomics reveals the diversity of genes expressed by eukaryotes in forest soils

21 January 2018

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Cloning, functional expression and characterization of three Phanerochaete chrysosporium endo-1,4-beta-xylanases

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00253-013-5457-X

The Plant Cell Wall-Decomposing Machinery Underlies the Functional Diversity of Forest Fungi

21 January 2018

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Isolation of fungal cellobiohydrolase I genes from sporocarps and forest soils by PCR

21 January 2018

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The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

21 January 2018

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Field guide to next-generation DNA sequencers

21 January 2018

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ESTs from the basidiomycete Schizophyllum commune grown on nitrogen-replete and nitrogen-limited media.

21 January 2018

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Phylogenetic comparison and classification of laccase and related multicopper oxidase protein sequences.

21 January 2018

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New and classic families of secreted fungal heme peroxidases.

21 January 2018

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Soil metaproteomics - Comparative evaluation of protein extraction protocols.

21 January 2018

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Fungi unearthed: transcripts encoding lignocellulolytic and chitinolytic enzymes in forest soil

21 January 2018

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Multiple multi-copper oxidase gene families in basidiomycetes - what for?

21 January 2018

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FOLy: an integrated database for the classification and functional annotation of fungal oxidoreductases potentially involved in the degradation of lignin and related aromatic compounds

21 January 2018

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Microbial cellulose utilization: fundamentals and biotechnology

21 January 2018

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Transcriptomic responses of the softwood-degrading white-rot fungus Phanerochaete carnosa during growth on coniferous and deciduous wood

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-013-5457-X

A decade's perspective on DNA sequencing technology

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00253-013-5457-X

Bridging mycorrhizal genomics, metagenomics and forest ecology

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00253-013-5457-X

The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-013-5457-X

Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-013-5457-X

Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00253-013-5457-X

The Pfam protein families database

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00253-013-5457-X

Secretome analysis of Phanerochaete chrysosporium strain CIRM-BRFM41 grown on softwood

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-013-5457-X

The ectomycorrhizal fungus Paxillus involutus converts organic matter in plant litter using a trimmed brown-rot mechanism involving Fenton chemistry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-013-5457-X

Carbon availability triggers the decomposition of plant litter and assimilation of nitrogen by an ectomycorrhizal fungus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-013-5457-X

The first genome-level transcriptome of the wood-degrading fungus Phanerochaete chrysosporium grown on red oak.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-013-5457-X

Expression analysis of extracellular proteins from Phanerochaete chrysosporium grown on different liquid and solid substrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-013-5457-X

Proteome analysis of fungal and bacterial involvement in leaf litter decomposition.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-013-5457-X

Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-013-5457-X

Transformation of Quercus petraea litter: successive changes in litter chemistry are reflected in differential enzyme activity and changes in the microbial community composition

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-013-5457-X

Aerobic deconstruction of cellulosic biomass by an insect-associated Streptomyces

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-013-5457-X

Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-013-5457-X

Transcriptome and secretome analyses of Phanerochaete chrysosporium reveal complex patterns of gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-013-5457-X

Comparative transcriptome and secretome analysis of wood decay fungi Postia placenta and Phanerochaete chrysosporium.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-013-5457-X

Significant alteration of gene expression in wood decay fungi Postia placenta and Phanerochaete chrysosporium by plant species

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-013-5457-X

The variability of the 16S rRNA gene in bacterial genomes and its consequences for bacterial community analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-013-5457-X

Fungal community on decomposing leaf litter undergoes rapid successional changes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-013-5457-X

The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-013-5457-X

Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-013-5457-X

Microdiversity of extracellular enzyme genes among sequenced prokaryotic genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-013-5457-X

The secretome of Pleurotus sapidus

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-013-5457-X

A molecular method to evaluate basidiomycete laccase gene expression in forest soils

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00253-013-5457-X

10.1007/S00253-013-5457-X

21 January 2018

Identifiers

DOI

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26 December 2017

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26 December 2017