(Q47108040)

8 January 2018

title

QuPath: Open source software for digital pathology image analysis. (English)

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8 January 2018

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Peter Bankhead

1

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Philip D Dunne

Philip D Dunne

6

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Darragh G. McArt

Darragh G McArt

5

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Yvonne Dombrowski

Yvonne Dombrowski

4

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author name string

Maurice B Loughrey

2

1 reference

8 January 2018

José A Fernández

3

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8 January 2018

Stephen McQuaid

7

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8 January 2018

Ronan T Gray

8

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8 January 2018

Liam J Murray

9

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8 January 2018

Helen G Coleman

10

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8 January 2018

Jacqueline A James

11

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8 January 2018

Manuel Salto-Tellez

12

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8 January 2018

Peter W Hamilton

13

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8 January 2018

language of work or name

English

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publication date

4 December 2017

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8 January 2018

published in

Scientific Reports

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8 January 2018

volume

7

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8 January 2018

issue

1

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8 January 2018

page(s)

16878

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8 January 2018

Creative Commons Attribution 4.0 International

copyright license

start time

1 December 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC5715110/fullTextXML

inferred from PubMed Central ID database lookup

CellProfiler

CellProfiler

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1038/s41598-017-17204-5

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cites work

Prognostic role of PD-L1 in malignant solid tumors: a meta-analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5715110

Collaborative analysis of multi-gigapixel imaging data using Cytomine

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5715110

Pembrolizumab for the treatment of non-small-cell lung cancer

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5715110

Mapping spatial heterogeneity in the tumor microenvironment: a new era for digital pathology.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5715110

SlideToolkit: an assistive toolset for the histological quantification of whole slide images

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5715110

Digital pathology and image analysis in tissue biomarker research

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5715110

OpenSlide: A vendor-neutral software foundation for digital pathology

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5715110

An international Ki67 reproducibility study

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5715110

Analyzing huge pathology images with open source software

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5715110

NIH Image to ImageJ: 25 years of image analysis

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5715110

Icy: an open bioimage informatics platform for extended reproducible research.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5715110

Fiji: an open-source platform for biological-image analysis

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5715110

A call for bioimaging software usability

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5715110

Reporting Recommendations for Tumor Marker Prognostic Studies (REMARK): explanation and elaboration

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5715110

Review of the current state of whole slide imaging in pathology

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5715110

ImmunoRatio: a publicly available web application for quantitative image analysis of estrogen receptor (ER), progesterone receptor (PR), and Ki-67

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5715110

Metadata matters: access to image data in the real world

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5715110

Do we see what we think we see? The complexities of morphological assessment

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5715110

CellProfiler: free, versatile software for automated biological image analysis

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5715110

Type, density, and location of immune cells within human colorectal tumors predict clinical outcome

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5715110

P53 abnormalities and outcomes in colorectal cancer: a systematic review.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5715110

Patterns and prognostic relevance of PD-1 and PD-L1 expression in colorectal carcinoma.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5715110

Immune-Derived PD-L1 Gene Expression Defines a Subgroup of Stage II/III Colorectal Cancer Patients with Favorable Prognosis Who May Be Harmed by Adjuvant Chemotherapy.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5715110

SLIC superpixels compared to state-of-the-art superpixel methods.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5715110

The carcinoma-stromal ratio of colon carcinoma is an independent factor for survival compared to lymph node status and tumor stage.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5715110

Heterogeneity of kinase inhibitor resistance mechanisms in GIST

15 August 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-17204-5

7 January 2021

Patterns of p53 immunoreactivity in endometrial carcinomas: 'all or nothing' staining is of importance

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-17204-5

7 January 2021

The prognostic significance of the aberrant extremes of p53 immunophenotypes in breast cancer

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-17204-5

7 January 2021

The proportion of tumor-stroma as a strong prognosticator for stage II and III colon cancer patients: validation in the VICTOR trial

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-17204-5

7 January 2021

A new immunohistochemical antibody for the assessment of estrogen receptor status on routine formalin-fixed tissue samples

1 reference

https://api.crossref.org/works/10.1038%2FS41598-017-17204-5

7 January 2021

Quantification of histochemical staining by color deconvolution

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29203879

12 December 2020

inferred from PubMed ID database lookup

Random Forests

1 reference

Astrophysics Data System

15 December 2022

https://ui.adsabs.harvard.edu/abs/2001MachL..45....5B/citations

Identifiers

DOI

10.1038/S41598-017-17204-5

1 reference

8 January 2018

0 references

1 reference

8 January 2018

PubMed publication ID

29203879

1 reference

8 January 2018