(Q47151351)

9 January 2018

title

Centromere evolution and CpG methylation during vertebrate speciation (English)

1 reference

9 January 2018

1 reference

Masahiko Kumagai

7

0 references

Yuta Suzuki

object named as

Yuta Suzuki

3

0 references

Ryohei Nakamura

object named as

Ryohei Nakamura

4

0 references

Naoki Irie

object named as

Naoki Irie

10

0 references

author name string

Kazuki Ichikawa

1

1 reference

9 January 2018

Shingo Tomioka

2

1 reference

9 January 2018

Koichiro Doi

5

1 reference

9 January 2018

Jun Yoshimura

6

1 reference

9 January 2018

Yusuke Inoue

8

1 reference

9 January 2018

Yui Uchida

9

1 reference

9 January 2018

Hiroyuki Takeda

11

1 reference

9 January 2018

Shinich Morishita

12

1 reference

9 January 2018

language of work or name

English

0 references

publication date

28 November 2017

1 reference

9 January 2018

published in

Nature Communications

1 reference

9 January 2018

volume

8

1 reference

9 January 2018

issue

1

1 reference

9 January 2018

page(s)

1833

1 reference

9 January 2018

Creative Commons Attribution 4.0 International

copyright license

start time

28 November 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1038/s41467-017-01982-7

0 references

cites work

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23 May 2018

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23 May 2018

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23 May 2018

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The molecular basis for centromere identity and function.

23 May 2018

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Associations between nucleosome phasing, sequence asymmetry, and tissue-specific expression in a set of inbred Medaka species

23 May 2018

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23 May 2018

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23 May 2018

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Centromere Associations in Meiotic Chromosome Pairing.

23 May 2018

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Evolutionary impact of transposable elements on genomic diversity and lineage-specific innovation in vertebrates

23 May 2018

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Assembly and diploid architecture of an individual human genome via single-molecule technologies

23 May 2018

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23 May 2018

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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

23 May 2018

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Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement

23 May 2018

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23 May 2018

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Whole-genome duplication in teleost fishes and its evolutionary consequences

23 May 2018

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Whole-genome haplotyping using long reads and statistical methods

23 May 2018

1 reference

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Centromere reference models for human chromosomes X and Y satellite arrays.

23 May 2018

1 reference

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Genomic and phenotypic characterization of a wild medaka population: towards the establishment of an isogenic population genetic resource in fish

23 May 2018

1 reference

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Sequence-specific microscopic visualization of DNA methylation status at satellite repeats in individual cell nuclei and chromosomes.

23 May 2018

1 reference

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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

23 May 2018

1 reference

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Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

Hybrid error correction and de novo assembly of single-molecule sequencing reads

23 May 2018

1 reference

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Genome-wide genetic variations are highly correlated with proximal DNA methylation patterns

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

Discriminative prediction of mammalian enhancers from DNA sequence.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

DNACLUST: accurate and efficient clustering of phylogenetic marker genes

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

Full-length transcriptome assembly from RNA-Seq data without a reference genome

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

Distinct DNA methylation patterns associated with active and inactive centromeres of the maize B chromosome

23 May 2018

1 reference

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Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications.

23 May 2018

1 reference

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Genome structural variation discovery and genotyping

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

The art of medaka genetics and genomics: what makes them so unique?

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

Divergence time of the two regional medaka populations in Japan as a new time scale for comparative genomics of vertebrates

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

Real-time DNA sequencing from single polymerase molecules

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

Epigenetic regulation of centromeric chromatin: old dogs, new tricks?

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

Transposable elements and the evolution of regulatory networks

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

Selective aluminum passivation for targeted immobilization of single DNA polymerase molecules in zero-mode waveguide nanostructures

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

The medaka draft genome and insights into vertebrate genome evolution

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

On the Inheritance of Color in a Fresh-Water Fish, APLOCHEILUS LATIPES Temmick and Schlegel, with Special Reference to Sex-Linked Inheritance

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

Genomic organization of the sex-determining and adjacent regions of the sex chromosomes of medaka

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

DNA sequence and analysis of human chromosome 8

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

Gene identification in novel eukaryotic genomes by self-training algorithm

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

The fragment assembly string graph

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

The DNA sequence of the human X chromosome

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

Gene finding in novel genomes

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

Zero-Mode Waveguides for Single-Molecule Analysis at High Concentrations

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

Genomic and genetic definition of a functional human centromere

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

Alpha-satellite DNA of primates: old and new families

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

The centromere paradox: stable inheritance with rapidly evolving DNA.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

EMBOSS: the European Molecular Biology Open Software Suite

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

The neighbor-joining method: a new method for reconstructing phylogenetic trees

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

Effects of A:T base pairs on the B–Z conformational transitions of DNA

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

KeBABS: an R package for kernel-based analysis of biological sequences.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

Large hypomethylated domains serve as strong repressive machinery for key developmental genes in vertebrates.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

Centromeric DNA hypomethylation as an epigenetic signature discriminates between germ and somatic cell lineages.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

Genetic linkage map of medaka with polymerase chain reaction length polymorphisms.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

DMY is a Y-specific DM-domain gene required for male development in the medaka fish.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

The spectrum kernel: a string kernel for SVM protein classification.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

Transposable element in fish.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5705604

Evolution of Repeated DNA Sequences by Unequal Crossover

15 August 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41467-017-01982-7

Geographic variation and diversity of the cytochrome b gene in Japanese wild populations of medaka, Oryzias latipes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41467-017-01982-7

inferred from DOI database lookup

7 January 2021

based on heuristic

Genome-wide mapping of cytosine methylation revealed dynamic DNA methylation patterns associated with genes and centromeres in rice

1 reference

https://api.crossref.org/works/10.1038%2FS41467-017-01982-7

inferred from DOI database lookup

7 January 2021

based on heuristic

γ‐Ray exposure accelerates spermatogenesis of medaka fish, Oryzias latipes

1 reference

https://api.crossref.org/works/10.1038%2FS41467-017-01982-7

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/S41467-017-01982-7

1 reference

9 January 2018

0 references

1 reference

9 January 2018

PubMed ID

29184138

1 reference

9 January 2018