(Q47211008)

http://europepmc.org/abstract/PMC/5843367

16 June 2018

title

Sooty mangabey genome sequence provides insight into AIDS resistance in a natural SIV host (English)

1 reference

http://europepmc.org/abstract/PMC/5843367

16 June 2018

author

Frank Kirchhoff

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Robert B. Norgren

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Kim C Worley

28

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

24

Christopher E Mason

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

R Alan Harris

16

1 reference

ORCID Public Data File 2021

Donna Muzny

25

object named as

Donna M Muzny

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

30

Guido Silvestri

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

12

Donald L Sodora

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

5

Mirko Paiardini

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

2

Steven E Bosinger

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

26

Richard A Gibbs

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

6

Ann Chahroudi

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

22

Matthew W Hahn

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

author name string

David Palesch

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Gregory K Tharp

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Thomas H Vanderford

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Zachary P Johnson

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Nirav B Patel

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Reem A Dawoud

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Caro-Beth Stewart

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Sara M Seepo

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Yue Liu

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Muthuswamy Raveendran

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Yi Han

19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Adam English

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Gregg W C Thomas

21

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Lenore Pipes

23

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Daniel Sauter

27

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Jeffrey Rogers

29

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

Beatrice H Hahn

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

language of work or name

English

0 references

publication date

1 January 2018

1 reference

http://europepmc.org/abstract/PMC/5843367

16 June 2018

published in

Nature

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

volume

553

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

issue

7686

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

page(s)

77-81

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

2 June 2020

copyright license

start time

1 January 2018

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Gene Tree Discordance Causes Apparent Substitution Rate Variation

18 June 2018

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18 June 2018

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18 June 2018

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Reduced Simian Immunodeficiency Virus Replication in Macrophages of Sooty Mangabeys Is Associated with Increased Expression of Host Restriction Factors

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

18 June 2018

1 reference

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Differential regulation of NF-κB-mediated proviral and antiviral host gene expression by primate lentiviral Nef and Vpu proteins

18 June 2018

1 reference

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PASTA: Ultra-Large Multiple Sequence Alignment for Nucleotide and Amino-Acid Sequences

18 June 2018

1 reference

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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

18 June 2018

1 reference

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Tissue-specific transcriptome sequencing analysis expands the non-human primate reference transcriptome resource (NHPRTR).

18 June 2018

1 reference

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A new rhesus macaque assembly and annotation for next-generation sequencing analyses.

18 June 2018

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HTSeq--a Python framework to work with high-throughput sequencing data

18 June 2018

1 reference

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Gibbon genome and the fast karyotype evolution of small apes

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

Divergent CD4+ T memory stem cell dynamics in pathogenic and nonpathogenic simian immunodeficiency virus infections

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

Comparative primate genomics: emerging patterns of genome content and dynamics

18 June 2018

1 reference

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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

18 June 2018

1 reference

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ICAM-2 facilitates luminal interactions between neutrophils and endothelial cells in vivo

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

Intact type I Interferon production and IRF7 function in sooty mangabeys

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

A mitogenomic phylogeny of living primates

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

The non-human primate reference transcriptome resource (NHPRTR) for comparative functional genomics

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

STAR: ultrafast universal RNA-seq aligner

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

Primer3--new capabilities and interfaces

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

Natural SIV hosts: showing AIDS the door

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

Low levels of SIV infection in sooty mangabey central memory CD⁴⁺ T cells are associated with limited CCR5 expression

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

Full-length transcriptome assembly from RNA-Seq data without a reference genome

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

A molecular phylogeny of living primates

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

Global genomic analysis reveals rapid control of a robust innate response in SIV-infected sooty mangabeys

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

Nonpathogenic SIV infection of African green monkeys induces a strong but rapidly controlled type I IFN response

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

The NCBI BioSystems database

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

CD4 downregulation by memory CD4+ T cells in vivo renders African green monkeys resistant to progressive SIVagm infection

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

HIV infection and the gastrointestinal immune system

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

Availability of activated CD4+ T cells dictates the level of viremia in naturally SIV-infected sooty mangabeys

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

Paucity of CD4+ CCR5+ T cells may prevent transmission of simian immunodeficiency virus in natural nonhuman primate hosts by breast-feeding

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

Severe depletion of mucosal CD4+ T cells in AIDS-free simian immunodeficiency virus-infected sooty mangabeys

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

PAML 4: phylogenetic analysis by maximum likelihood

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

Enhancements and modifications of primer design program Primer3.

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

Microbial translocation is a cause of systemic immune activation in chronic HIV infection

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

TimeTree: a public knowledge-base of divergence times among organisms

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

Cytometric bead array: a multiplexed assay platform with applications in various areas of biology

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

Overexpression of CD14, TLR4, and MD-2 in HEK 293T cells does not prevent induction of in vitro endotoxin tolerance

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

Lipopolysaccharide endotoxins

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

An efficient algorithm for large-scale detection of protein families

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

Lymphocyte function-associated antigen-1 binding residues in intercellular adhesion molecule-2 (ICAM-2) and the integrin binding surface in the ICAM subfamily

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

Functional cloning of ICAM-2, a cell adhesion ligand for LFA-1 homologous to ICAM-1

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

Estimating gene gain and loss rates in the presence of error in genome assembly and annotation using CAFE 3.

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

GSEA-P: a desktop application for Gene Set Enrichment Analysis.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

Correlates of preserved CD4(+) T cell homeostasis during natural, nonpathogenic simian immunodeficiency virus infection of sooty mangabeys: implications for AIDS pathogenesis

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

Gene expression profiling of host response in models of acute HIV infection

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

Toll-like receptor 4, but not toll-like receptor 2, is a signaling receptor for Escherichia and Salmonella lipopolysaccharides

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5843367

14 August 2018

Identifiers

DOI

10.1038/NATURE25140

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29300007%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

PubMed publication ID

29300007

1 reference