(Q47339086)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26829752%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

title

A single three-dimensional chromatin compartment in amphioxus indicates a stepwise evolution of vertebrate Hox bimodal regulation (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26829752%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26829752%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

Ferdinand Marlétaz

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26829752%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

Carlos Gómez-Marín

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26829752%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

Peter Holland

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26829752%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

Ignacio Maeso

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26829752%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

Rafael D Acemel

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26829752%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

Ibai Irastorza-Azcarate

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26829752%20AND%20SRC:MED&resulttype=core&format=json

Elisa de la Calle-Mustienes

6 March 2020

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26829752%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

Stéphanie Bertrand

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26829752%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

Jean-Marc Aury

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26829752%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

Damien Devos

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26829752%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

Hector Escriva

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26829752%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

author name string

Sergio G Diaz

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26829752%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

Daniel Aldea

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26829752%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

Sophie Mangenot

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26829752%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

José Luis Gómez-Skarmeta

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26829752%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

language of work or name

English

0 references

publication date

1 February 2016

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26829752%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26829752%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

volume

48

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26829752%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

issue

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26829752%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

page(s)

336-341

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26829752%20AND%20SRC:MED&resulttype=core&format=json

Quantitative analysis of chromosome conformation capture assays (3C-qPCR).

6 March 2020

cites work

1 reference

12 December 2020

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

1 reference

12 December 2020

Temporal dynamics and developmental memory of 3D chromatin architecture at Hox gene loci

1 reference

12 December 2020

Topology of mammalian developmental enhancers and their regulatory landscapes

1 reference

12 December 2020

The regulation of Hox gene expression during animal development

1 reference

12 December 2020

A switch between topological domains underlies HoxD genes collinearity in mouse limbs

1 reference

12 December 2020

Evolutionary crossroads in developmental biology: amphioxus.

1 reference

12 December 2020

Chromatin-driven behavior of topologically associating domains

1 reference

12 December 2020

An ancient genomic regulatory block conserved across bilaterians and its dismantling in tetrapods by retrogene replacement

1 reference

12 December 2020

Early development of cephalochordates (amphioxus).

1 reference

12 December 2020

Zebrafish enhancer detection (ZED) vector: A new tool to facilitate transgenesis and the functional analysis ofcis-regulatory regions in zebrafish

1 reference

12 December 2020

AUGUSTUS: ab initio prediction of alternative transcripts

1 reference

12 December 2020

A large permissive regulatory domain exclusively controls Tbx3 expression in the cardiac conduction system.

1 reference

12 December 2020

Conserved expression domains for genes upstream and within the HoxA and HoxD clusters suggests a long-range enhancer existed before cluster duplication.

1 reference

12 December 2020

Preliminary observations on the spawning conditions of the European amphioxus (Branchiostoma lanceolatum) in captivity.

1 reference

12 December 2020

Enhancer loops appear stable during development and are associated with paused polymerase.

1 reference

12 December 2020

Structure, function and evolution of topologically associating domains (TADs) at HOX loci.

1 reference

12 December 2020

Conservation and divergence of regulatory strategies at Hox Loci and the origin of tetrapod digits

1 reference

12 December 2020

Transgenesis and gene trap methods in zebrafish by using the Tol2 transposable element.

1 reference

12 December 2020

The dynamic architecture of Hox gene clusters.

1 reference

12 December 2020

Topological domains in mammalian genomes identified by analysis of chromatin interactions

1 reference

12 December 2020

Deep conservation of wrist and digit enhancers in fish

1 reference

12 December 2020

Broken colinearity of the amphioxus Hox cluster.

1 reference

12 December 2020

Gene density, transcription, and insulators contribute to the partition of the Drosophila genome into physical domains

1 reference

12 December 2020

Transgenic analysis of Hoxd gene regulation during digit development.

1 reference

12 December 2020

Evidence for stasis and not genetic piracy in developmental expression patterns of Branchiostoma lanceolatum and Branchiostoma floridae, two amphioxus species that have evolved independently over the course of 200 Myr.

1 reference

12 December 2020

Amphioxus Evx Genes: Implications for the Evolution of the Midbrain–Hindbrain Boundary and the Chordate Tailbud

1 reference

12 December 2020

TM4: a free, open-source system for microarray data management and analysis

1 reference

12 December 2020

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

1 reference

12 December 2020

Disruptions of topological chromatin domains cause pathogenic rewiring of gene-enhancer interactions

1 reference

12 December 2020

Genomic organization of Hox and ParaHox clusters in the echinoderm, Acanthaster planci.

1 reference

12 December 2020

Convergent evolution of complex regulatory landscapes and pleiotropy at Hox loci.

1 reference

12 December 2020

Spatial organization of the mouse genome and its role in recurrent chromosomal translocations

1 reference

12 December 2020

Determining long-range chromatin interactions for selected genomic sites using 4C-seq technology: from fixation to computation.

1 reference

12 December 2020

Clustering of tissue-specific sub-TADs accompanies the regulation of HoxA genes in developing limbs

1 reference

12 December 2020

CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes

1 reference

12 December 2020

Primer3 on the WWW for general users and for biologist programmers

1 reference

12 December 2020

Capturing chromosome conformation

1 reference

12 December 2020

HaploMerger: reconstructing allelic relationships for polymorphic diploid genome assemblies

1 reference

12 December 2020

A genome-wide view of transcription factor gene diversity in chordate evolution: less gene loss in amphioxus?

1 reference

12 December 2020

The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules

1 reference

12 December 2020

Putting the pieces together: integrative modeling platform software for structure determination of macromolecular assemblies

1 reference

12 December 2020

Two rounds of whole genome duplication in the ancestral vertebrate

1 reference

12 December 2020

Comparative Hi-C reveals that CTCF underlies evolution of chromosomal domain architecture

1 reference

12 December 2020

A regulatory archipelago controls Hox genes transcription in digits

1 reference

12 December 2020

Obesity-associated variants within FTO form long-range functional connections with IRX3

1 reference

12 December 2020

Architectural proteins: regulators of 3D genome organization in cell fate

1 reference

12 December 2020

FLASH: fast length adjustment of short reads to improve genome assemblies

1 reference

12 December 2020

Automated generation of heuristics for biological sequence comparison

1 reference

12 December 2020

Musket: a multistage k-mer spectrum-based error corrector for Illumina sequence data

1 reference

12 December 2020

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

1 reference

12 December 2020

Insights into spawning behavior and development of the European amphioxus (Branchiostoma lanceolatum).

1 reference

12 December 2020

VISTA: computational tools for comparative genomics

1 reference

12 December 2020