(Q47385179)

English

Genomic analysis in Escherichia coli demonstrates differential roles for polynucleotide phosphorylase and RNase II in mRNA abundance and decay

scientific article published on October 1, 2003

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scholarly article

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Europe PubMed Central

PubMed publication ID

15 January 2018

http://europepmc.org/abstract/MED/14617186

Genomic analysis in Escherichia coli demonstrates differential roles for polynucleotide phosphorylase and RNase II in mRNA abundance and decay (English)

1 reference

10.1046/J.1365-2958.2003.03724.X

https://api.crossref.org/works/10.1046/J.1365-2958.2003.03724.X

1 April 2024

Escherichia coli

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bacterial genome

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14617186

1 April 2024

1 reference

10.1046/J.1365-2958.2003.03724.X

https://api.crossref.org/works/10.1046/J.1365-2958.2003.03724.X

1 April 2024

author name string

Bijoy K. Mohanty

1

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Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14617186

1 April 2024

Sidney R. Kushner

2

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Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A14617186

1 April 2024

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publication date

1 October 2003

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Europe PubMed Central

PubMed publication ID

15 January 2018

http://europepmc.org/abstract/MED/14617186

full work available at URL

https://api.wiley.com/onlinelibrary/tdm/v1/articles/10.1046%2Fj.1365-2958.2003.03724.x

1 reference

10.1046/J.1365-2958.2003.03724.X

https://api.crossref.org/works/10.1046/J.1365-2958.2003.03724.X

1 April 2024

https://onlinelibrary.wiley.com/doi/pdf/10.1046/j.1365-2958.2003.03724.x

1 reference

10.1046/J.1365-2958.2003.03724.X

https://api.crossref.org/works/10.1046/J.1365-2958.2003.03724.X

1 April 2024

Molecular Microbiology

1 reference

Europe PubMed Central

PubMed publication ID

15 January 2018

http://europepmc.org/abstract/MED/14617186

50

1 reference

Europe PubMed Central

PubMed publication ID

15 January 2018

http://europepmc.org/abstract/MED/14617186

2

1 reference

Europe PubMed Central

PubMed publication ID

15 January 2018

http://europepmc.org/abstract/MED/14617186

645-658

1 reference

Europe PubMed Central

PubMed publication ID

15 January 2018

http://europepmc.org/abstract/MED/14617186

Stabilization of discrete mRNA breakdown products in ams pnp rnb multiple mutants of Escherichia coli K-12

1 reference

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New method for generating deletions and gene replacements in Escherichia coli

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Stabilization of the 3' one-third of Escherichia coli ribosomal protein S20 mRNA in mutants lacking polynucleotide phosphorylase

1 reference

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Specific endonucleolytic cleavage of the mRNA for ribosomal protein S20 of Escherichia coli requires the product of the ams gene in vivo and in vitro

1 reference

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Degradation of RNA in Escherichia coli. A hypothesis

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Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays

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The complete genome sequence of Escherichia coli K-12

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Copurification of E. coli RNAase E and PNPase: evidence for a specific association between two enzymes important in RNA processing and degradation.

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Analysis of gene control signals by DNA fusion and cloning in Escherichia coli

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Incorporation of water oxygens into intracellular nucleotides and RNA. II. Predominantly hydrolytic RNA turnover in Escherichia coli

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Coupling between mRNA synthesis and mRNA stability in Escherichia coli.

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Overexpression, purification, and properties of Escherichia coli ribonuclease II

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Differential sensitivities of portions of the mRNA for ribosomal protein S20 to 3'-exonucleases dependent on oligoadenylation and RNA secondary structure.

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Reconstitution of the degradation of the mRNA for ribosomal protein S20 with purified enzymes

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Degradation of mRNA in Escherichia coli: an old problem with some new twists

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Reconstitution of a minimal RNA degradosome demonstrates functional coordination between a 3' exonuclease and a DEAD-box RNA helicase

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Microarray expression profiling: capturing a genome-wide portrait of the transcriptome

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Exoribonucleases and their multiple roles in RNA metabolism

16

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Enzymatic basis for hydrolytic versus phosphorolytic mRNA degradation in Escherichia coli and Bacillus subtilis

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Polynucleotide phosphorylase and ribonuclease II are required for cell viability and mRNA turnover in Escherichia coli K-12.

18

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Oligoribonuclease is an essential component of the mRNA decay pathway

19

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Messenger RNA stability and its role in control of gene expression in bacteria and phages

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Roles of RNase E, RNase II and PNPase in the degradation of the rpsO transcripts of Escherichia coli: stabilizing function of RNase II and evidence for efficient degradation in an ams pnp rnb mutant.

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Polyadenylylation destabilizes the rpsO mRNA of Escherichia coli

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Multiple degradation pathways of the rpsO mRNA of Escherichia coli. RNase E interacts with the 5' and 3' extremities of the primary transcript.

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Differential analysis of DNA microarray gene expression data

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Mutational analysis of polynucleotide phosphorylase from Escherichia coli.

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mRNA decay in Escherichia coli comes of age.

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DEAD box RhlB RNA helicase physically associates with exoribonuclease PNPase to degrade double-stranded RNA independent of the degradosome-assembling region of RNase E.

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Improving DNA array data quality by minimising 'neighbourhood' effects.

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RNase II removes the oligo(A) tails that destabilize the rpsO mRNA of Escherichia coli

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Proteins associated with RNase E in a multicomponent ribonucleolytic complex

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Analysis of the function of Escherichia coli poly(A) polymerase I in RNA metabolism

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Polynucleotide phosphorylase functions both as a 3' right-arrow 5' exonuclease and a poly(A) polymerase in Escherichia coli

38

1 reference

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Polynucleotide phosphorylase, RNase II and RNase E play different roles in the in vivo modulation of polyadenylation in Escherichia coli

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Polyadenylation of Escherichia coli transcripts plays an integral role in regulating intracellular levels of polynucleotide phosphorylase and RNase E

40

1 reference

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Polyadenylylation helps regulate mRNA decay in Escherichia coli.

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Decay of the IS10 antisense RNA by 3' exoribonucleases: evidence that RNase II stabilizes RNA-OUT against PNPase attack.

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Construction and characterization of an absolute deletion mutant of<i>Escherichia coli</i>ribonuclease II

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A protein complex mediating mRNA degradation in Escherichia coli.

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A DEAD-box RNA helicase in the Escherichia coli RNA degradosome

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New plasmids carrying antibiotic-resistance cassettes.

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Degradation of mRNA in bacteria: emergence of ubiquitous features

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Characterization of Polynucleotide Phosphorylase Mutants ofEscherichia coli

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Genome-wide expression profiling in Escherichia coli K-12

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Action of RNase II and polynucleotide phosphorylase against RNAs containing stem-loops of defined structure

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Preferential cleavage of degradative intermediates of rpsT mRNA by the Escherichia coli RNA degradosome

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Emerging features of mRNA decay in bacteria

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Ribonuclease E organizes the protein interactions in the Escherichia coli RNA degradosome

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Precision and functional specificity in mRNA decay

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Transcriptional and post-transcriptional control of polynucleotide phosphorylase during cold acclimation in Escherichia coli

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PNPase modulates RNase II expression in Escherichia coli: implications for mRNA decay and cell metabolism

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Identifiers

10.1046/J.1365-2958.2003.03724.X

1 reference

Europe PubMed Central

PubMed publication ID

15 January 2018

http://europepmc.org/abstract/MED/14617186

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

15 January 2018

http://europepmc.org/abstract/MED/14617186

ResearchGate publication ID

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