(Q47613442)

4 February 2018

title

Mutation-Driven Parallel Evolution during Viral Adaptation (English)

1 reference

4 February 2018

author name string

Andrew M Sackman

1

1 reference

4 February 2018

Lindsey W McGee

2

1 reference

4 February 2018

Anneliese J Morrison

3

1 reference

4 February 2018

Jessica Pierce

4

1 reference

4 February 2018

Jeremy Anisman

5

1 reference

4 February 2018

Hunter Hamilton

6

1 reference

4 February 2018

Stephanie Sanderbeck

7

1 reference

4 February 2018

Cayla Newman

8

1 reference

4 February 2018

Darin R Rokyta

9

1 reference

4 February 2018

publication date

27 September 2017

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4 February 2018

Molecular Biology and Evolution

published in

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4 February 2018

volume

34

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4 February 2018

issue

12

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4 February 2018

page(s)

3243-3253

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4 February 2018

Mutational biases influence parallel adaptation

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

What drives parallel evolution?: How population size and mutational variation contribute to repeated evolution.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Elevating fitness after a horizontal gene exchange in bacteriophage φX174.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Predictable convergence in hemoglobin function has unpredictable molecular underpinnings

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Love the one you're with: replicate viral adaptations converge on the same phenotypic change

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Causes of molecular convergence and parallelism in protein evolution

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

On the Causes of Evolutionary Transition:Transversion Bias

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Synergistic Pleiotropy Overrides the Costs of Complexity in Viral Adaptation

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Intergenic incompatibilities reduce fitness in hybrids of extremely closely related bacteriophages

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Contribution of a mutational hot spot to hemoglobin adaptation in high-altitude Andean house wrens

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Widespread convergence in toxin resistance by predictable molecular evolution

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

The Kinetic and Thermodynamic Aftermath of Horizontal Gene Transfer Governs Evolutionary Recovery

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Payoffs, not tradeoffs, in the adaptation of a virus to ostensibly conflicting selective pressures

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Adaptation in tunably rugged fitness landscapes: the rough Mount Fuji model

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Microbial evolution. Global epistasis makes adaptation predictable despite sequence-level stochasticity

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Empirical fitness landscapes and the predictability of evolution

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Influenza virus drug resistance: a time-sampled population genetics perspective

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

A bayesian MCMC approach to assess the complete distribution of fitness effects of new mutations: uncovering the potential for adaptive walks in challenging environments

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Environment determines epistatic patterns for a ssDNA virus

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

The adaptive potential of hybridization demonstrated with bacteriophages

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Parallel molecular evolution in an herbivore community

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

The consistency of beneficial fitness effects of mutations across diverse genetic backgrounds

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Quantifying the adaptive potential of an antibiotic resistance enzyme

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

The molecular diversity of adaptive convergence.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Evolutionary paths to antibiotic resistance under dynamically sustained drug selection

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Cost of adaptation and fitness effects of beneficial mutations in Pseudomonas fluorescens.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Convergence, adaptation, and constraint

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Epistasis between beneficial mutations and the phenotype-to-fitness Map for a ssDNA virus

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Initial mutations direct alternative pathways of protein evolution

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Population genetics, pleiotropy, and the preferential fixation of mutations during adaptive evolution.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Genic incompatibilities in two hybrid bacteriophages

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

The genetics of adaptation for eight microvirid bacteriophages

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

The distribution of fitness effects of beneficial mutations in Pseudomonas aeruginosa

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Parallel genetic evolution within and between bacteriophage species of varying degrees of divergence

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Genomic evolution in a virus under specific selection for host recognition

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

A general extreme value theory model for the adaptation of DNA sequences under strong selection and weak mutation

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Beneficial fitness effects are not exponential for two viruses.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

The distribution of beneficial and fixed mutation fitness effects close to an optimum

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Testing the extreme value domain of attraction for distributions of beneficial fitness effects

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Convergent adaptation of human lactase persistence in Africa and Europe

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Tests of parallel molecular evolution in a long-term experiment with Escherichia coli

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Distribution of fitness effects among beneficial mutations before selection in experimental populations of bacteria

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Horizontal gene transfer and the evolution of microvirid coliphage genomes

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Perspective: Sign epistasis and genetic constraint on evolutionary trajectories

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Widespread parallel evolution in sticklebacks by repeated fixation of Ectodysplasin alleles

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

An empirical test of the mutational landscape model of adaptation using a single-stranded DNA virus

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

The distribution of fitness effects caused by single-nucleotide substitutions in an RNA virus

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Parallel functional changes in the digestive RNases of ruminants and colobines by divergent amino acid substitutions

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

The Distribution of Fitness Effects Among Beneficial Mutations

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Profiles of adaptation in two similar viruses

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Bias in the introduction of variation as an orienting factor in evolution

29 September 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

29 September 2018

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSX257

Different trajectories of parallel evolution during viral adaptation

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

The fate of competing beneficial mutations in an asexual population.

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Detection of convergent and parallel evolution at the amino acid sequence level

29 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5850295

Mutation-Biased Adaptation in a Protein NK Model

29 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSX257

FISHER'S MODEL AND THE GENOMICS OF ADAPTATION: RESTRICTED PLEIOTROPY, HETEROGENOUS MUTATION, AND PARALLEL EVOLUTION

21 January 2018

1 reference

12 December 2020

The probability of parallel evolution

1 reference

12 December 2020

Properties of adaptive walks on uncorrelated landscapes under strong selection and weak mutation.

1 reference

12 December 2020

The population genetics of adaptation: the adaptation of DNA sequences

1 reference

12 December 2020

Molecular Evolution Over the Mutational Landscape

1 reference

12 December 2020

Bypass of genetic constraints during mutator evolution to antibiotic resistance

1 reference

12 December 2020

Identifiers

DOI

10.1093/MOLBEV/MSX257

1 reference

4 February 2018

PMC publication ID

5850295

0 references

1 reference

4 February 2018