(Q47623684)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10199660%20AND%20SRC:MED&resulttype=core&format=json

4 December 2019

title

Beta-hairpin and beta-sheet formation in designed linear peptides (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10199660%20AND%20SRC:MED&resulttype=core&format=json

4 December 2019

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10199660%20AND%20SRC:MED&resulttype=core&format=json

4 December 2019

author name string

M Ramírez-Alvarado

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10199660%20AND%20SRC:MED&resulttype=core&format=json

4 December 2019

F J Blanco

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10199660%20AND%20SRC:MED&resulttype=core&format=json

4 December 2019

L Serrano

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10199660%20AND%20SRC:MED&resulttype=core&format=json

4 December 2019

language of work or name

English

0 references

publication date

1 January 1999

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10199660%20AND%20SRC:MED&resulttype=core&format=json

Bioorganic & Medicinal Chemistry

4 December 2019

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10199660%20AND%20SRC:MED&resulttype=core&format=json

4 December 2019

volume

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10199660%20AND%20SRC:MED&resulttype=core&format=json

4 December 2019

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10199660%20AND%20SRC:MED&resulttype=core&format=json

4 December 2019

page(s)

93-103

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10199660%20AND%20SRC:MED&resulttype=core&format=json

Funnels, pathways, and the energy landscape of protein folding: a synthesis

4 December 2019

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Theoretical studies of protein folding and unfolding

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Dominant forces in protein folding

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

The mechanism of alpha-helix formation by peptides

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Stability of alpha-helices

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Helix design, prediction and stability

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Context-dependent secondary structure formation of a designed protein sequence

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Analysis of the effect of local interactions on protein stability.

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Helix-coil transition of the isolated amino terminus of ribonuclease

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Helix stabilization by Glu-...Lys+ salt bridges in short peptides of de novo design

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Unusually stable helix formation in short alanine-based peptides

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Theory of the Phase Transition between Helix and Random Coil in Polypeptide Chains

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Empirical parameterization of a model for predicting peptide helix/coil equilibrium populations

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Stabilization of proteins by rational design of alpha-helix stability using helix/coil transition theory.

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Favourable native-like helical local interactions can accelerate protein folding

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Conformation of twisted β-pleated sheets in proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Thermodynamic beta-sheet propensities measured using a zinc-finger host peptide.

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Measurement of the β-sheet-forming propensities of amino acids

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Context is a major determinant of β-sheet propensity

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Guidelines for protein design: the energetics of beta sheet side chain interactions

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Intrinsic secondary structure propensities of the amino acids, using statistical phi-psi matrices: comparison with experimental scales.

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Beta-hairpin families in globular proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Conformation of β-hairpins in protein structures

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Conformational parameters for amino acids in helical, beta-sheet, and random coil regions calculated from proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Analysis of two-residue turns in proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Analysis and prediction of the different types of beta-turn in proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

A revised set of potentials for beta-turn formation in proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Free energy determinants of secondary structure formation: III. beta-turns and their role in protein folding

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Beta-turn propensities as paradigms for the analysis of structural motifs to engineer protein stability

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Beta-hairpins in proteins revisited: lessons for de novo design

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Tendamistat (12-26) fragment. NMR characterization of isolated beta-turn folding intermediates

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Defining solution conformations of small linear peptides

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Dissecting the structure of a partially folded protein. Circular dichroism and nuclear magnetic resonance studies of peptides from ubiquitin

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Local conformations of peptides representing the entire sequence of bovine pancreatic trypsin inhibitor and their roles in folding

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

NMR solution structure of the isolated N-terminal fragment of protein-G B1 domain. Evidence of trifluoroethanol induced native-like beta-hairpin formation

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Conformational analysis of peptides corresponding to beta-hairpins and a beta-sheet that represent the entire sequence of the alpha-spectrin SH3 domain.

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Folding of Protein G B1 Domain Studied by the Conformational Characterization of Fragments Comprising Its Secondary Structure Elements

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Native-like beta-hairpin structure in an isolated fragment from ferredoxin: NMR and CD studies of solvent effects on the N-terminal 20 residues.

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

An NMR study on the beta-hairpin region of barnase

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Conformational analysis of peptides corresponding to all the secondary structure elements of protein L B1 domain: secondary structure propensities are not conserved in proteins with the same fold

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Origin of β-Hairpin Stability in Solution: Structural and Thermodynamic Analysis of the Folding of a Model Peptide Supports Hydrophobic Stabilization in Water

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

A short linear peptide that folds into a native stable beta-hairpin in aqueous solution

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

An analysis of side chain interactions and pair correlations within antiparallel beta-sheets: the differences between backbone hydrogen-bonded and non-hydrogen-bonded residue pairs.

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

A short linear peptide derived from the N-terminal sequence of ubiquitin folds into a water-stable non-native β-hairpin

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

De novo design and structural analysis of a model beta-hairpin peptide system

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Role of beta-turn residues in beta-hairpin formation and stability in designed peptides.

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Motional dynamics of residues in a beta-hairpin peptide measured by 13C-NMR relaxation

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Conformational investigation of designed short linear peptides able to fold into beta-hairpin structures in aqueous solution

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Turn Residue Sequence Determines β-Hairpin Conformation in Designed Peptides

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Cross-strand side-chain interactions versus turn conformation in beta-hairpins

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

The anatomy and taxonomy of protein structure

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

A thermodynamic scale for the beta-sheet forming tendencies of the amino acids.

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Secondary structure of proteins through circular dichroism spectroscopy

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Secondary-structure dependent chemical shifts in proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Peptide group chemical shift computation

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Chemical shifts and three-dimensional protein structures

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

'Random coil' 1H chemical shifts obtained as a function of temperature and trifluoroethanol concentration for the peptide series GGXGG.

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

1H, 13C and 15N random coil NMR chemical shifts of the common amino acids. I. Investigations of nearest-neighbor effects

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Comparison between the phi distribution of the amino acids in the protein database and NMR data indicates that amino acids have various phi propensities in the random coil conformation

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Analysis of main chain torsion angles in proteins: prediction of NMR coupling constants for native and random coil conformations

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Studies of synthetic helical peptides using circular dichroism and nuclear magnetic resonance

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Free energy determinants of secondary structure formation: II. Antiparallel beta-sheets

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Interactions Responsible for the pH Dependence of the beta-Hairpin Conformational Population Formed by a Designed Linear Peptide

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

The de novo design of protein structures

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Betadoublet: de novo design, synthesis, and characterization of a beta-sandwich protein

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Engineering of betabellin 14D: disulfide-induced folding of a beta-sheet protein

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

A designed metal-binding protein with a novel fold

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

NMR structure of a de novo designed, peptide 33mer with two distinct, compact beta-sheet folds

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

ICM?A new method for protein modeling and design: Applications to docking and structure prediction from the distorted native conformation

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Mechanism of helix induction by trifluoroethanol: a framework for extrapolating the helix-forming properties of peptides from trifluoroethanol/water mixtures back to water

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Structure of the WW domain of a kinase-associated protein complexed with a proline-rich peptide.

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

WHAT IF: a molecular modeling and drug design program

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

Design of a 20-amino acid, three-stranded beta-sheet protein

1 reference

https://api.crossref.org/works/10.1016%2FS0968-0896%2898%2900215-6

7 January 2021

10.1016/S0968-0896(98)00215-6

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10199660%20AND%20SRC:MED&resulttype=core&format=json

4 December 2019

1 reference