(Q47906350)

27 June 2018

title

Therapeutic targeting of ependymoma as informed by oncogenic enhancer profiling. (English)

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27 June 2018

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3

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Serap Erkek

7

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Angel M. Carcaboso

49

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Till Milde

52

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Anne Song

Anne Song

9

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Xiuxing Wang

Xiuxing Wang

6

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Tyler Miller

Tyler E Miller

18

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Jüri Reimand

Jüri Reimand

36

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Vijay Ramaswamy

Vijay Ramaswamy

64

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Eric Bouffet

62

Eric Bouffet

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69

Peter Lichter

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Marcel Kool

73

Marcel Kool

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Stefan M. Pfister

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Stefan M Pfister

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Paul A Northcott

67

Paul A Northcott

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Andrey Korshunov

70

Andrey Korshunov

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Jeremy N Rich

75

Jeremy N Rich

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James Rutka

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James T Rutka

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David T. W. Jones

57

David T W Jones

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Peter J. Houghton

50

Peter J Houghton

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27 June 2018

Michael D. Taylor

74

Michael D Taylor

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Kristian W Pajtler

2

Kristian W Pajtler

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Kenneth D Aldape

48

Kenneth D Aldape

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Stephen C Mack

1

Stephen C Mack

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Alexander J Federation

8

Alexander Federation

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Marina Ryzhova

20

Marina Ryzhova

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Marc Zapatka

46

Marc Zapatka

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Annie Huang

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Annie Huang

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Nada Jabado

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Nada Jabado

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Zhiqin Huang

47

Zhiqin Huang

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Borja Holgado

35

Borja L Holgado

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Laura O'Donovan

22

Laura Donovan

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27 June 2018

Livia Garzia

21

Livia Garzia

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27 June 2018

Betty Luu

25

Betty Luu

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27 June 2018

Susanne N. Gröbner

44

Susanne N Gröbner

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27 June 2018

Yuan Thompson

34

Yuan Thompson

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27 June 2018

Konstantin Okonechnikov

4

Konstantin Okonechnikov

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27 June 2018

Kelsey C Bertrand

5

Kelsey C Bertrand

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27 June 2018

Patrick Sin-Chan

15

Patrick Sin-Chan

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27 June 2018

author name string

Christine Lee

10

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27 June 2018

Xin Wang

11

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Laura McDonald

12

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James J Morrow

13

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Alina Saiakhova

14

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Qiulian Wu

16

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Kulandaimanuvel Antony Michaelraj

17

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27 June 2018

Christopher G Hubert

19

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27 June 2018

Stephen Dombrowski

23

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27 June 2018

Daniel C Factor

24

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Claudia L L Valentim

26

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27 June 2018

Ryan C Gimple

27

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Andrew Morton

28

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Leo Kim

29

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27 June 2018

Briana C Prager

30

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27 June 2018

John J Y Lee

31

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27 June 2018

Xiaochong Wu

32

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27 June 2018

Jennifer Zuccaro

33

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27 June 2018

Susan Q Ke

37

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27 June 2018

Adam Tropper

38

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27 June 2018

Sisi Lai

39

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27 June 2018

Senthuran Vijayarajah

40

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27 June 2018

Sylvia Doan

41

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27 June 2018

Vaidehi Mahadev

42

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27 June 2018

Ana Fernandez Miñan

43

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27 June 2018

Matthias Lienhard

45

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27 June 2018

Stephen T Keir

51

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27 June 2018

Hendrik Witt

53

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27 June 2018

Yan Li

54

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27 June 2018

Chao-Jun Li

55

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27 June 2018

Xiu-Wu Bian

56

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27 June 2018

Ian Scott

58

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27 June 2018

Sheila K Singh

59

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27 June 2018

Peter B Dirks

61

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27 June 2018

James E Bradner

63

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27 June 2018

Mathieu Lupien

68

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27 June 2018

Peter C Scacheri

71

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27 June 2018

language of work or name

English

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publication date

20 December 2017

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27 June 2018

number of pages

5

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based on heuristic

inferred from page(s)

published in

Nature

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27 June 2018

volume

553

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27 June 2018

issue

7686

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27 June 2018

page(s)

101-105

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27 June 2018

describes a project that uses

Cytoscape

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9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

exact match

https://scigraph.springernature.com/pub.10.1038/nature25169

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cites work

QSEA-modelling of genome-wide DNA methylation from sequencing enrichment experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5993422

InFusion: Advancing Discovery of Fusion Genes and Chimeric Transcripts from Deep RNA-Sequencing Data

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5993422

COSMIC: somatic cancer genetics at high-resolution

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5993422

Models of human core transcriptional regulatory circuitries

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5993422

Active medulloblastoma enhancers reveal subgroup-specific cellular origins

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5993422

Decreased FOXJ1 expression and its ciliogenesis programme in aggressive ependymoma and choroid plexus tumours

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5993422

Identification of focally amplified lineage-specific super-enhancers in human epithelial cancers

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5993422

Data analysis: Create a cloud commons

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5993422

An in vivo screen identifies ependymoma oncogenes and tumor-suppressor genes.

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5993422

Molecular Classification of Ependymal Tumors across All CNS Compartments, Histopathological Grades, and Age Groups

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5993422

Convergence of developmental and oncogenic signaling pathways at transcriptional super-enhancers

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5993422

Integrative analysis of 111 reference human epigenomes

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5993422

Topologically associating domains are stable units of replication-timing regulation

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5993422

Decoding the regulatory landscape of medulloblastoma using DNA methylation sequencing

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5993422

Epigenomic alterations define lethal CIMP-positive ependymomas of infancy

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5993422

C11orf95-RELA fusions drive oncogenic NF-κB signalling in ependymoma

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5993422

DGIdb: mining the druggable genome

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5993422

Super-enhancers in the control of cell identity and disease

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5993422

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5993422

Selective inhibition of tumor oncogenes by disruption of super-enhancers

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5993422

STAR: ultrafast universal RNA-seq aligner

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5993422

Delineation of two clinically and molecularly distinct subgroups of posterior fossa ependymoma

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5993422

Genome-wide histone acetylation data improve prediction of mammalian transcription factor binding sites

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5993422

Cross-species genomics matches driver mutations and cell compartments to model ependymoma

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5993422

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5993422

g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experiments

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5993422

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5993422

Radial glia cells are candidate stem cells of ependymoma

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5993422

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5993422

Atypical Teratoid/Rhabdoid Tumors Are Comprised of Three Epigenetic Subgroups with Distinct Enhancer Landscapes.

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5993422

14 August 2018

Identifiers

DOI

10.1038/NATURE25169

1 reference

27 June 2018

PMCID

5993422

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27 June 2018

PubMed ID

29258295

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27 June 2018