(Q47959607)

7 February 2018

review article

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title

Models and simulations of ion channels and related membrane proteins (English)

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7 February 2018

1 reference

Sansom MS

1

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7 February 2018

publication date

1 April 1998

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7 February 2018

Current Opinion in Structural Biology

published in

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7 February 2018

volume

8

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7 February 2018

issue

2

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7 February 2018

page(s)

237-244

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7 February 2018

A computer perspective of membranes: molecular dynamics studies of lipid bilayer systems

cites work

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https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Molecular Dynamics Simulations of the Gramicidin Channel

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7 January 2021

The divalent cation-binding sites of gramicidin A transmembrane ion-channel

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7 January 2021

High-resolution conformation of gramicidin A in a lipid bilayer by solid-state NMR.

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7 January 2021

A semi-microscopic Monte Carlo study of permeation energetics in a gramicidin-like channel: the origin of cation selectivity

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7 January 2021

Valence selectivity of the gramicidin channel: a molecular dynamics free energy perturbation study

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7 January 2021

The binding site of sodium in the gramicidin A channel: comparison of molecular dynamics with solid-state NMR data

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7 January 2021

Ion-water and water-water interactions in a gramicidinlike channel: effects due to group polarizability and backbone flexibility.

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7 January 2021

Molecular dynamics study of free energy profiles for organic cations in gramicidin A channels

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https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Proton conductance by the gramicidin water wire. Model for proton conductance in the F1F0 ATPases?

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https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Visualizing proton conductance in the gramicidin channel

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7 January 2021

Structure and dynamics of hydronium in the ion channel gramicidin A.

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https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Structure and dynamics of a proton wire: a theoretical study of H+ translocation along the single-file water chain in the gramicidin A channel

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https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Ab initio molecular dynamics study of proton transfer in a polyglycine analog of the ion channel gramicidin A.

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https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Structure and function of channel-forming peptaibols

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https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Alamethicin channels - modelling via restrained molecular dynamics simulations

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Ion channel stabilization of synthetic alamethicin analogs by rings of inter-helix H-bonds

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Ion channel stability and hydrogen bonding. Molecular modelling of channels formed by synthetic alamethicin analogues.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

A novel method for structure-based prediction of ion channel conductance properties.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Intrinsic rectification of ion flux in alamethicin channels: studies with an alamethicin dimer

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https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

A helical-dipole model describes the single-channel current rectification of an uncharged peptide ion channel

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https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Structural perspectives of phospholamban, a helical transmembrane pentamer

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https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Channels formed by the transmembrane helix of phospholamban: a simulation study

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https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Influenza A virus M2 ion channel protein: a structure-function analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Selective proton permeability and pH regulation of the influenza virus M2 channel expressed in mouse erythroleukaemia cells.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Identification of an ion channel activity of the Vpu transmembrane domain and its involvement in the regulation of virus release from HIV-1-infected cells

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

The influenza A virus M2 channel: a molecular modeling and simulation study.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

A functionally defined model for the M2 proton channel of influenza A virus suggests a mechanism for its ion selectivity

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Ion channels formed by HIV-1 Vpu: a modelling and simulation study

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

The pore domain of the nicotinic acetylcholine receptor: molecular modeling, pore dimensions, and electrostatics.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Acetylcholine receptor channel imaged in the open state

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Molecular dynamics study of water and Na+ ions in models of the pore region of the nicotinic acetylcholine receptor

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

The dielectric properties of water within model transbilayer pores.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

A mixed helix-beta-sheet model of the transmembrane region of the nicotinic acetylcholine receptor.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Molecular modelling of the nicotinic acetylcholine receptor transmembrane region in the open state

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

A model of the nicotinic receptor extracellular domain based on sequence identity and residue location

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Predicted structure of the extracellular region of ligand-gated ion-channel receptors shows SH2-like and SH3-like domains forming the ligand-binding site

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Three-dimensional models of non-NMDA glutamate receptors

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

The pore-lining region of shaker voltage-gated potassium channels: comparison of beta-barrel and alpha-helix bundle models

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Shaker pore structure as predicted by annealed atomic simulation using symmetry and novel geometric restraints

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Structural model of the outer vestibule and selectivity filter of the Shaker voltage-gated K+ channel

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Solvation, water permeation, and ionic selectivity of a putative model for the pore region of the voltage-gated sodium channel.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Models of ion pores in N-type voltage-gated calcium channels

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

A molecular mechanism for toxin block in N-type calcium channels

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Computer simulations of the OmpF porin from the outer membrane of Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

A molecular dynamics study of the pores formed by Escherichia coli OmpF porin in a fully hydrated palmitoyloleoylphosphatidylcholine bilayer

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Energy barrier presented to ions by the vestibule of the biological membrane channel

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Permeation through an open channel: Poisson-Nernst-Planck theory of a synthetic ionic channel

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Water in channel-like cavities: structure and dynamics.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Molecular dynamics simulations of water within models of ion channels

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Interaction of an amphiphilic peptide with a phospholipid bilayer surface by molecular dynamics simulation study

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Simulation of voltage-dependent interactions of alpha-helical peptides with lipid bilayers

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Calculations of the electrostatic potential adjacent to model phospholipid bilayers

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Electrostatic binding of proteins to membranes. Theoretical predictions and experimental results with charybdotoxin and phospholipid vesicles

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Insertion of peptide chains into lipid membranes: an off-lattice Monte Carlo dynamics model

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

A Monte Carlo model of fd and Pf1 coat proteins in lipid membranes

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

The structure of a membrane-spanning polypeptide studied by molecular dynamics

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Simulation studies of alamethicin-bilayer interactions

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Helix bending in alamethicin: molecular dynamics simulations and amide hydrogen exchange in methanol

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Free-energy determinants of alpha-helix insertion into lipid bilayers

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Helix-helix interactions in lipid bilayers

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Structure, energetics, and dynamics of lipid-protein interactions: A molecular dynamics study of the gramicidin A channel in a DMPC bilayer

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Transmembrane helix structure, dynamics, and interactions: multi-nanosecond molecular dynamics simulations

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Molecular dynamics of individual alpha-helices of bacteriorhodopsin in dimyristol phosphatidylocholine. I. Structure and dynamics

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Membrane protein folding and oligomerization: the two-stage model

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

X-ray structure of bacteriorhodopsin at 2.5 angstroms from microcrystals grown in lipidic cubic phases

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Structure and Fluctuations of Bacteriorhodopsin in the Purple Membrane: A Molecular Dynamics Study

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Thermodynamic stability of water molecules in the bacteriorhodopsin proton channel: a molecular dynamics free energy perturbation study

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

Investigation of the proton release channel of bacteriorhodopsin in different intermediates of the photo cycle. A molecular dynamics study

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

pK(a) calculations along a bacteriorhodopsin molecular dynamics trajectory

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980045-6

7 January 2021

10.1016/S0959-440X(98)80045-6

Identifiers

DOI

1 reference

7 February 2018

release_3gdf2cxp4bdqfpjzvergqdf2pm

Fatcat ID

0 references

1 reference

7 February 2018