(Q48325945)

English

Comparative genome and phenotypic analysis of three Clostridioides difficile strains isolated from a single patient provide insight into multiple infection of C. difficile

scientific article published on 2 January 2018

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

PMC publication ID

10 February 2018

http://europepmc.org/abstract/PMC/5749029

Comparative genome and phenotypic analysis of three Clostridioides difficile strains isolated from a single patient provide insight into multiple infection of C. difficile (English)

1 reference

Europe PubMed Central

PMC publication ID

10 February 2018

http://europepmc.org/abstract/PMC/5749029

Clostridium difficile

0 references

Heiko Liesegang

object named as

Heiko Liesegang

15

0 references

Cathrin Spröer

7

object named as

Cathrin Spröer

1 reference

Europe PubMed Central

10 February 2018

PMC publication ID

6

object named as

Boyke Bunk

1 reference

Europe PubMed Central

10 February 2018

PMC publication ID

12

object named as

Jörg Overmann

1 reference

Europe PubMed Central

PMC publication ID

10 February 2018

http://europepmc.org/abstract/PMC/5749029

author name string

Uwe Groß

1

1 reference

Europe PubMed Central

PMC publication ID

10 February 2018

http://europepmc.org/abstract/PMC/5749029

Elzbieta Brzuszkiewicz

2

1 reference

Europe PubMed Central

PMC publication ID

10 February 2018

http://europepmc.org/abstract/PMC/5749029

Katrin Gunka

3

1 reference

Europe PubMed Central

PMC publication ID

10 February 2018

http://europepmc.org/abstract/PMC/5749029

Jessica Starke

4

1 reference

Europe PubMed Central

PMC publication ID

10 February 2018

http://europepmc.org/abstract/PMC/5749029

Thomas Riedel

5

1 reference

Europe PubMed Central

PMC publication ID

10 February 2018

http://europepmc.org/abstract/PMC/5749029

Daniela Wetzel

8

1 reference

Europe PubMed Central

PMC publication ID

10 February 2018

http://europepmc.org/abstract/PMC/5749029

Anja Poehlein

9

1 reference

Europe PubMed Central

PMC publication ID

10 February 2018

http://europepmc.org/abstract/PMC/5749029

Cynthia Chibani

10

1 reference

Europe PubMed Central

PMC publication ID

10 February 2018

http://europepmc.org/abstract/PMC/5749029

Wolfgang Bohne

11

1 reference

Europe PubMed Central

PMC publication ID

10 February 2018

http://europepmc.org/abstract/PMC/5749029

Ortrud Zimmermann

13

1 reference

Europe PubMed Central

PMC publication ID

10 February 2018

http://europepmc.org/abstract/PMC/5749029

Rolf Daniel

14

1 reference

Europe PubMed Central

PMC publication ID

10 February 2018

http://europepmc.org/abstract/PMC/5749029

language of work or name

0 references

publication date

2 January 2018

1 reference

Europe PubMed Central

PMC publication ID

10 February 2018

http://europepmc.org/abstract/PMC/5749029

1 reference

Europe PubMed Central

PMC publication ID

10 February 2018

http://europepmc.org/abstract/PMC/5749029

19

1 reference

Europe PubMed Central

PMC publication ID

10 February 2018

http://europepmc.org/abstract/PMC/5749029

1

1 reference

Europe PubMed Central

PMC publication ID

10 February 2018

http://europepmc.org/abstract/PMC/5749029

1

1 reference

Europe PubMed Central

PMC publication ID

10 February 2018

http://europepmc.org/abstract/PMC/5749029

https://scigraph.springernature.com/pub.10.1186/s12864-017-4368-0

0 references

Manual curation and reannotation of the genomes of Clostridium difficile 630Δerm and C. difficile 630.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

A genetic switch controls the production of flagella and toxins in Clostridium difficile

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

The emerging metabolic view of Clostridium difficile pathogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Use of single molecule sequencing for comparative genomics of an environmental and a clinical isolate of Clostridium difficile ribotype 078.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Complete Genome Sequence of the Clostridium difficile Type Strain DSM 1296T.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Tracing the Spread of Clostridium difficile Ribotype 027 in Germany Based on Bacterial Genome Sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Diversity and Evolution in the Genome of Clostridium difficile

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Host-Pathogen Coevolution: The Selective Advantage of Bacillus thuringiensis Virulence and Its Cry Toxin Genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Clostridium difficile infection in the twenty-first century

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

As Clear as Mud? Determining the Diversity and Prevalence of Prophages in the Draft Genomes of Estuarine Isolates of Clostridium difficile

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Recurrence of dual-strain Clostridium difficile infection in an in vitro human gut model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Genome Resequencing of the Virulent and Multidrug-Resistant Reference Strain Clostridium difficile 630.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Site-specific DNA Inversion by Serine Recombinases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Insight into alteration of gut microbiota in Clostridium difficile infection and asymptomatic C. difficile colonization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

The role of flagella in Clostridium difficile pathogenicity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Genomics of Clostridium tetani.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Mobile genetic elements in Clostridium difficile and their role in genome function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Prokka: rapid prokaryotic genome annotation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Detection of mixed infection from bacterial whole genome sequence data allows assessment of its role in Clostridium difficile transmission

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Overcoming barriers to effective recognition and diagnosis of Clostridium difficile infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Current status of Clostridium difficile infection epidemiology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Phylomark, a tool to identify conserved phylogenetic markers from whole-genome alignments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Clostridium difficile infection in the community: a zoonotic disease?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Prevalence and implications of multiple-strain infections

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Communicable diseases prioritized for surveillance and epidemiological research: results of a standardized prioritization procedure in Germany, 2011.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Reconsidering the sporulation characteristics of hypervirulent Clostridium difficile BI/NAP1/027.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

The impact of recombination on dN/dS within recently emerged bacterial clones

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Genome sequence analyses of two isolates from the recent Escherichia coli outbreak in Germany reveal the emergence of a new pathotype: Entero-Aggregative-Haemorrhagic Escherichia coli (EAHEC)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Proteinortho: detection of (co-)orthologs in large-scale analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Host imprints on bacterial genomes--rapid, divergent evolution in individual patients

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Evolutionary dynamics of Clostridium difficile over short and long time scales

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Comparative genome and phenotypic analysis of Clostridium difficile 027 strains provides insight into the evolution of a hypervirulent bacterium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

A novel genetic switch controls phase variable expression of CwpV, a Clostridium difficile cell wall protein.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Fast and accurate short read alignment with Burrows-Wheeler transform

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Comparative analysis of BI/NAP1/027 hypervirulent strains reveals novel toxin B-encoding gene (tcdB) sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Treatment of Clostridium difficile-associated disease: old therapies and new strategies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Versatile and open software for comparing large genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Comparison of toxinotyping and PCR ribotyping of Clostridium difficile strains and description of novel toxinotypes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Phenotypic and genotypic diversity of the flagellin gene (fliC) among Clostridium difficile isolates from different serogroups

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Definition of the single integration site of the pathogenicity locus in Clostridium difficile.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

22 May 2018

Molecular characterization of moxifloxacin resistance from Canadian Clostridium difficile clinical isolates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

14 August 2018

Diversity of moxifloxacin resistance during a nosocomial outbreak of a predominantly ribotype ARU 027 Clostridium difficile diarrhea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

14 August 2018

gyrA mutations in fluoroquinolone-resistant Clostridium difficile PCR-027.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5749029

14 August 2018

Comparison of the burdens of hospital-onset, healthcare facility-associated Clostridium difficile Infection and of healthcare-associated infection due to methicillin-resistant Staphylococcus aureus in community hospitals

1 reference

https://pubmed.ncbi.nlm.nih.gov/29291715

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/S12864-017-4368-0

1 reference

https://api.fatcat.wiki/v0/release/ndttfdpawjb2fckwbmjqqt3jom

30 July 2022

based on heuristic

mapped directly with Wikidata item

Dimensions Publication ID

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/s12864-017-4368-0

release_ndttfdpawjb2fckwbmjqqt3jom

1 reference

https://api.fatcat.wiki/v0/release/ndttfdpawjb2fckwbmjqqt3jom

30 July 2022

based on heuristic

mapped directly with Wikidata item

PMC publication ID

1 reference

https://api.fatcat.wiki/v0/release/ndttfdpawjb2fckwbmjqqt3jom

30 July 2022

based on heuristic

mapped directly with Wikidata item

PubMed publication ID

1 reference

https://api.fatcat.wiki/v0/release/ndttfdpawjb2fckwbmjqqt3jom

30 July 2022

based on heuristic

mapped directly with Wikidata item

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q48325945&oldid=2195237152"