(Q49836890)

English

High-throughput and Sensitive Immunopeptidomics Platform Reveals Profound Interferonγ-Mediated Remodeling of the Human Leukocyte Antigen (HLA) Ligandome.

scientific article published on 14 December 2017

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scholarly article

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Europe PubMed Central

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7 April 2020

High-throughput and Sensitive Immunopeptidomics Platform Reveals Profound Interferonγ-Mediated Remodeling of the Human Leukocyte Antigen (HLA) Ligandome (English)

1 reference

Europe PubMed Central

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7 April 2020

Michal Bassani-Sternberg

9

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7 April 2020

4

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7 April 2020

author name string

Chloe Chong

1

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7 April 2020

Fabio Marino

2

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7 April 2020

Roy T Daniel

5

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7 April 2020

Markus Müller

6

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7 April 2020

David Gfeller

7

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7 April 2020

George Coukos

8

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7 April 2020

HuiSong Pak

3

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7 April 2020

publication date

14 December 2017

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7 April 2020

Molecular & Cellular Proteomics

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7 April 2020

17

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7 April 2020

533-548

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7 April 2020

3

1 reference

Europe PubMed Central

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7 April 2020

Unveiling the Peptide Motifs of HLA-C and HLA-G from Naturally Presented Peptides and Generation of Binding Prediction Matrices

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836376

10 July 2018

Deciphering HLA-I motifs across HLA peptidomes improves neo-antigen predictions and identifies allostery regulating HLA specificity.

1 reference

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10 July 2018

A Case for a Human Immuno-Peptidome Project Consortium

1 reference

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10 July 2018

An immunogenic personal neoantigen vaccine for patients with melanoma

1 reference

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10 July 2018

GibbsCluster: unsupervised clustering and alignment of peptide sequences.

1 reference

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10 July 2018

Targeting neoantigens to augment antitumour immunity

1 reference

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10 July 2018

Mass Spectrometry Profiling of HLA-Associated Peptidomes in Mono-allelic Cells Enables More Accurate Epitope Prediction

1 reference

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10 July 2018

MHC-I peptides get out of the groove and enable a novel mechanism of HIV-1 escape.

1 reference

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10 July 2018

Unconventional Peptide Presentation by Major Histocompatibility Complex (MHC) Class I Allele HLA-A*02:01: BREAKING CONFINEMENT.

1 reference

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10 July 2018

A Molecular Basis for the Presentation of Phosphorylated Peptides by HLA-B Antigens

1 reference

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10 July 2018

Direct identification of clinically relevant neoepitopes presented on native human melanoma tissue by mass spectrometry

1 reference

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10 July 2018

MHC class I-associated peptides derive from selective regions of the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836376

10 July 2018

The MaxQuant computational platform for mass spectrometry-based shotgun proteomics

1 reference

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10 July 2018

Proteomic analysis uncovers common effects of IFN-γ and IL-27 on the HLA class I antigen presentation machinery in human cancer cells.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836376

10 July 2018

Carcinogenesis of renal cell carcinoma reflected in HLA ligands: A novel approach for synergistic peptide vaccination design

1 reference

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10 July 2018

Unsupervised HLA Peptidome Deconvolution Improves Ligand Prediction Accuracy and Predicts Cooperative Effects in Peptide-HLA Interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836376

10 July 2018

Approach for Identifying Human Leukocyte Antigen (HLA)-DR Bound Peptides from Scarce Clinical Samples

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836376

10 July 2018

Analysis of the HLA-DR peptidome from human dendritic cells reveals high affinity repertoires and nonconventional pathways of peptide generation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836376

10 July 2018

The Perseus computational platform for comprehensive analysis of (prote)omics data

1 reference

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10 July 2018

Mass spectrometry-based antigen discovery for cancer immunotherapy.

1 reference

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10 July 2018

Functional Interaction of the Ankylosing Spondylitis-Associated Endoplasmic Reticulum Aminopeptidase 2 With the HLA-B*27 Peptidome in Human Cells.

1 reference

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10 July 2018

High-sensitivity HLA class I peptidome analysis enables a precise definition of peptide motifs and the identification of peptides from cell lines and patients' sera.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836376

10 July 2018

Toxoplasma gondii peptide ligands open the gate of the HLA class I binding groove

1 reference

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10 July 2018

Use of HLA peptidomics and whole exome sequencing to identify human immunogenic neo-antigens.

1 reference

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10 July 2018

Defining the HLA class I-associated viral antigen repertoire from HIV-1-infected human cells

1 reference

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10 July 2018

Accurate pan-specific prediction of peptide-MHC class II binding affinity with improved binding core identification

1 reference

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10 July 2018

The antigenic landscape of multiple myeloma: mass spectrometry (re)defines targets for T-cell-based immunotherapy

1 reference

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10 July 2018

Neoantigens in cancer immunotherapy.

1 reference

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10 July 2018

Cancer immunotherapy. A dendritic cell vaccine increases the breadth and diversity of melanoma neoantigen-specific T cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836376

10 July 2018

Pooled Analysis of Long-Term Survival Data From Phase II and Phase III Trials of Ipilimumab in Unresectable or Metastatic Melanoma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836376

10 July 2018

Mass Spectrometry of Human Leukocyte Antigen Class I Peptidomes Reveals Strong Effects of Protein Abundance and Turnover on Antigen Presentation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836376

10 July 2018

Standard and immunoproteasomes show similar peptide degradation specificities.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836376

10 July 2018

The immune epitope database (IEDB) 3.0.

1 reference

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10 July 2018

Proteasome isoforms exhibit only quantitative differences in cleavage and epitope generation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836376

10 July 2018

Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836376

10 July 2018

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5836376

10 July 2018

Expanding the detectable HLA peptide repertoire using electron-transfer/higher-energy collision dissociation (EThcD).

1 reference

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10 July 2018

The human leukocyte antigen-presented ligandome of B lymphocytes

1 reference

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10 July 2018

Kinetics of antigen expression and epitope presentation during virus infection.

1 reference

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10 July 2018

Biochemical large-scale identification of MHC class I ligands

1 reference

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10 July 2018

Seq2Logo: a method for construction and visualization of amino acid binding motifs and sequence profiles including sequence weighting, pseudo counts and two-sided representation of amino acid enrichment and depletion

1 reference

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10 July 2018

Class II MHC self-antigen presentation in human B and T lymphocytes

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10 July 2018

Towards a systems understanding of MHC class I and MHC class II antigen presentation.

1 reference

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10 July 2018

The MHC I immunopeptidome conveys to the cell surface an integrative view of cellular regulation.

1 reference

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10 July 2018

HLA-DR-presented peptide repertoires derived from human monocyte-derived dendritic cells pulsed with blood coagulation factor VIII.

1 reference

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10 July 2018

Conformation of peptides bound to the transporter associated with antigen processing (TAP)

1 reference

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10 July 2018

Soluble plasma HLA peptidome as a potential source for cancer biomarkers

1 reference

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10 July 2018

CD8+ enriched "young" tumor infiltrating lymphocytes can mediate regression of metastatic melanoma

1 reference

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10 July 2018

Molecular mechanisms of IFN-gamma to up-regulate MHC class I antigen processing and presentation

1 reference

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10 July 2018

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

1 reference

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10 July 2018

Large scale mass spectrometric profiling of peptides eluted from HLA molecules reveals N-terminal-extended peptide motifs

1 reference

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10 July 2018

Identification of class I MHC-associated phosphopeptides as targets for cancer immunotherapy

1 reference

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10 July 2018

The Tübingen approach: identification, selection, and validation of tumor-associated HLA peptides for cancer therapy

1 reference

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10 July 2018

Antigen presentation by MHC class I and its regulation by interferon gamma

1 reference

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10 July 2018

Requirements for proteolysis during apoptosis

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10 July 2018

Recognition principle of the TAP transporter disclosed by combinatorial peptide libraries.

1 reference

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10 July 2018

Personalized neoantigen vaccines: A new approach to cancer immunotherapy.

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14 August 2018

NetMHCpan-4.0: Improved Peptide-MHC Class I Interaction Predictions Integrating Eluted Ligand and Peptide Binding Affinity Data.

1 reference

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14 August 2018

Personalized RNA mutanome vaccines mobilize poly-specific therapeutic immunity against cancer.

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14 August 2018

Antigen presentation profiling reveals recognition of lymphoma immunoglobulin neoantigens.

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14 August 2018

Mapping the HLA ligandome landscape of acute myeloid leukemia: a targeted approach toward peptide-based immunotherapy

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14 August 2018

Simplified protocol for clinical-grade tumor-infiltrating lymphocyte manufacturing with use of the Wave bioreactor.

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14 August 2018

Exploring the MHC-peptide matrix of central tolerance in the human thymus.

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14 August 2018

Exploiting the glioblastoma peptidome to discover novel tumour-associated antigens for immunotherapy.

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14 August 2018

Integrated functional genomics approach for the design of patient-individual antitumor vaccines.

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14 August 2018

Improved visualization of protein consensus sequences by iceLogo

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30 November 2018

Interferon-gamma enhances cytotoxic T lymphocyte recognition of endogenous peptide in keratinocytes without lowering the requirement for surface peptide

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mutations as munitions: Neoantigen vaccines get a closer look as cancer treatment

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1074/MCP.TIR117.000383

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29242379%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29242379%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29242379%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

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