(Q37452154)

20 August 2017

MHC class I-associated peptides derive from selective regions of the human genome (English)

1 reference

20 August 2017

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841757%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

12

Pierre Thibault

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841757%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

4

Chantal Durette

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841757%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

6

Mathieu Courcelles

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841757%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

9

Caroline Côté

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841757%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

11

Sébastien Lemieux

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841757%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

10

Sylvie Mader

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841757%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Jean-Philippe Laverdure

8

object named as

Jean-Philippe Laverdure

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841757%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

3

Diana Paola Granados

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841757%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

5

Eric Bonneil

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841757%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

author name string

Hillary Pearson

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841757%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Tariq Daouda

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841757%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Anja Rodenbrock

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841757%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

language of work or name

English

0 references

publication date

14 November 2016

1 reference

Journal of Clinical Investigation

20 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841757%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

volume

126

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841757%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

issue

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841757%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

page(s)

4690-4701

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841757%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

4 June 2020

1 reference

10 June 2022

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=5127664

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The interdependence of transcript and protein abundance: new data--new complexities

23 August 2017

1 reference

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Tunable protein synthesis by transcript isoforms in human cells

23 August 2017

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Analysis of Major Histocompatibility Complex (MHC) Immunopeptidomes Using Mass Spectrometry

23 August 2017

1 reference

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Predicting effective microRNA target sites in mammalian mRNAs

23 August 2017

1 reference

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Single-cell transcriptome analysis reveals coordinated ectopic gene-expression patterns in medullary thymic epithelial cells

23 August 2017

1 reference

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An open-source computational and data resource to analyze digital maps of immunopeptidomes

23 August 2017

1 reference

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The proteomic landscape of triple-negative breast cancer

23 August 2017

1 reference

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The ensembl regulatory build

23 August 2017

1 reference

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Neoantigens in cancer immunotherapy.

23 August 2017

1 reference

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Large-Scale Targeted Proteomics Using Internal Standard Triggered-Parallel Reaction Monitoring (IS-PRM).

23 August 2017

1 reference

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Immunogenetics. Dynamic profiling of the protein life cycle in response to pathogens

23 August 2017

1 reference

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Mass Spectrometry of Human Leukocyte Antigen Class I Peptidomes Reveals Strong Effects of Protein Abundance and Turnover on Antigen Presentation

23 August 2017

1 reference

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Predicting immunogenic tumour mutations by combining mass spectrometry and exome sequencing.

23 August 2017

1 reference

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Allele frequency net 2015 update: new features for HLA epitopes, KIR and disease and HLA adverse drug reaction associations

23 August 2017

1 reference

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DISOPRED3: precise disordered region predictions with annotated protein-binding activity

23 August 2017

1 reference

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Effects of messenger RNA structure and other translational control mechanisms on major histocompatibility complex-I mediated antigen presentation

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Population and single-cell genomics reveal the Aire dependency, relief from Polycomb silencing, and distribution of self-antigen expression in thymic epithelia

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Intrinsically disordered segments affect protein half-life in the cell and during evolution

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Revisiting thymic positive selection and the mature T cell repertoire for antigen

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Insights into the initiation of TCR signaling

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

A draft map of the human proteome

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Impact of genomic polymorphisms on the repertoire of human MHC class I-associated peptides

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Cryptic MHC class I-binding peptides are revealed by aminoglycoside-induced stop codon read-through into the 3' UTR.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Massively parallel functional annotation of 3' untranslated regions

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Re-examining class-I presentation and the DRiP hypothesis

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Translating DRiPs: MHC class I immunosurveillance of pathogens and tumors.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

HLA class I alleles are associated with peptide-binding repertoires of different size, affinity, and immunogenicity

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Translation of pre-spliced RNAs in the nuclear compartment generates peptides for the MHC class I pathway

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Quorum sensing allows T cells to discriminate between self and nonself

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Mining exomic sequencing data to identify mutated antigens recognized by adoptively transferred tumor-reactive T cells

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Pathways of antigen processing

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Translational control by 3'-UTR-binding proteins

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Proteome sampling by the HLA class I antigen processing pathway

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

GPS-ARM: computational analysis of the APC/C recognition motif by predicting D-boxes and KEN-boxes

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

23 August 2017

ViennaRNA Package 2.0

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Identification of new viral genes and transcript isoforms during Epstein-Barr virus reactivation using RNA-Seq

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

The MHC I immunopeptidome conveys to the cell surface an integrative view of cellular regulation.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Deletion of immunoproteasome subunits imprints on the transcriptome and has a broad impact on peptides presented by major histocompatibility complex I molecules.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Fast on-rates allow short dwell time ligands to activate T cells

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Bioinformatical approaches to characterize intrinsically disordered/unstructured proteins

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

HLA class I supertypes: a revised and updated classification

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

The final touches make perfect the peptide-MHC class I repertoire

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Rethinking peptide supply to MHC class I molecules

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

High guanine and cytosine content increases mRNA levels in mammalian cells

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

A plaidoyer for 'systems immunology'.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Toward a definition of self: proteomic evaluation of the class I peptide repertoire

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Making sense of mass destruction: quantitating MHC class I antigen presentation

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Sequence complexity of disordered protein

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

EMBOSS: the European Molecular Biology Open Software Suite

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

SYFPEITHI: database for MHC ligands and peptide motifs

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Protein identification and analysis tools in the ExPASy server

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

PEST sequences and regulation by proteolysis

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Targeting cancer-specific mutations by T cell receptor gene therapy

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

A comprehensive transcriptional portrait of human cancer cell lines

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

The nature of self for T cells-a systems-level perspective

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Proteasome subtypes and the processing of tumor antigens: increasing antigenic diversity

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Origin and plasticity of MHC I-associated self peptides

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Networks controlling mRNA decay in the immune system.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Insights into MHC class I antigen processing gained from large-scale analysis of class I ligands

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

The human leukocyte antigen-presented ligandome of B lymphocytes

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Quantitating protein synthesis, degradation, and endogenous antigen processing

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Global proteogenomic analysis of human MHC class I-associated peptides derived from non-canonical reading frames

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Proteogenomic-based discovery of minor histocompatibility antigens with suitable features for immunotherapy of hematologic cancers.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Differential Features of AIRE-Induced and AIRE-Independent Promiscuous Gene Expression in Thymic Epithelial Cells

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Incorporating key position and amino acid residue features to identify general and species-specific Ubiquitin conjugation sites.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

MHC I-associated peptides preferentially derive from transcripts bearing miRNA response elements

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

NetMHCcons: a consensus method for the major histocompatibility complex class I predictions

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Distorted relation between mRNA copy number and corresponding major histocompatibility complex ligand density on the cell surface.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

An unstructured initiation site is required for efficient proteasome-mediated degradation

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5127664

Structural disorder in viral proteins

2 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27841757

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1172/JCI88590

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841757%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27841757%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

PubMed publication ID

27841757

1 reference