(Q49844057)

28 February 2018

title

Mouse chromocenters DNA content: sequencing and in silico analysis. (English)

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28 February 2018

author name string

Dmitrii I Ostromyshenskii

1

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28 February 2018

Ekaterina N Chernyaeva

2

1 reference

28 February 2018

Inna S Kuznetsova

3

1 reference

28 February 2018

Olga I Podgornaya

4

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28 February 2018

language of work or name

English

0 references

publication date

20 February 2018

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28 February 2018

published in

BMC Genomics

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28 February 2018

volume

19

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28 February 2018

issue

1

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28 February 2018

page(s)

151

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28 February 2018

https://scigraph.springernature.com/pub.10.1186/s12864-018-4534-z

exact match

0 references

1 reference

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Telomere Repeat-Binding Factor 2 Is Responsible for the Telomere Attachment to the Nuclear Membrane

22 May 2018

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Genetic variation and the de novo assembly of human genomes

22 May 2018

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Genome-wide analysis of tandem repeats in Tribolium castaneum genome reveals abundant and highly dynamic tandem repeat families with satellite DNA features in euchromatic chromosomal arms

22 May 2018

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Completing the human genome: the progress and challenge of satellite DNA assembly

22 May 2018

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Characterization and dynamics of pericentromere-associated domains in mice

22 May 2018

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Trimmomatic: a flexible trimmer for Illumina sequence data

22 May 2018

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Nucleosomes and centromeric DNA packaging.

22 May 2018

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Topology of mammalian developmental enhancers and their regulatory landscapes

22 May 2018

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Heterochromatin formation and transcription in relation to trans-inactivation of genes and their spatial organization in the nucleus

22 May 2018

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Position-effect variegation, heterochromatin formation, and gene silencing in Drosophila

22 May 2018

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Something silent this way forms: the functional organization of the repressive nuclear compartment

22 May 2018

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The hierarchy of the 3D genome

22 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution

22 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Transposable elements re-wire and fine-tune the transcriptome

22 May 2018

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IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

22 May 2018

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Such small hands: the roles of centrins/caltractins in the centriole and in genome maintenance

22 May 2018

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Fast gapped-read alignment with Bowtie 2

22 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Repetitive elements may comprise over two-thirds of the human genome

22 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Repetitive DNA and next-generation sequencing: computational challenges and solutions

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Tandemly repeated DNA families in the mouse genome

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Recent amplification of the kangaroo endogenous retrovirus, KERV, limited to the centromere

22 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Genome-wide characterization of centromeric satellites from multiple mammalian genomes

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Histone variants--ancient wrap artists of the epigenome

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Distinct retroelement classes define evolutionary breakpoints demarcating sites of evolutionary novelty

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Nuclear architecture of rod photoreceptor cells adapts to vision in mammalian evolution.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

HAC stability in murine cells is influenced by nuclear localization and chromatin organization

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

LINE retrotransposon RNA is an essential structural and functional epigenetic component of a core neocentromeric chromatin

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Analysis of the largest tandemly repeated DNA families in the human genome

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Murine endogenous retroviruses

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Effects of retroviruses on host genome function.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Comparative analyses of human single- and multilocus tandem repeats

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

SnoRNA Snord116 (Pwcr1/MBII-85) deletion causes growth deficiency and hyperphagia in mice

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Centromere assembly and propagation

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Centrin isoforms in mammals. Relation to calmodulin

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

The X and Y chromosomes assemble into H2A.Z-containing [corrected] facultative heterochromatin [corrected] following meiosis.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Mouse telocentric sequences reveal a high rate of homogenization and possible role in Robertsonian translocation

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Transcription of two human genes from a bidirectional endogenous retrovirus promoter

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Synergy between sequence and size in Large-scale genomics

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

New types of mouse centromeric satellite DNAs

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Molecular origins of rapid and continuous morphological evolution

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Mouse centric and pericentric satellite repeats form distinct functional heterochromatin

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Telomere-Binding TRF2/MTBP Localization during Mouse Spermatogenesis and Cell Cycle of the Mouse Cells L929

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Structure-specific DNA-binding proteins as the foundation for three-dimensional chromatin organization

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Initial sequencing and comparative analysis of the mouse genome

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Isolation of the chromocenter fraction from mouse liver nuclei

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

On the sequencing of the human genome

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Genomic and genetic definition of a functional human centromere

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Centromere DNA dynamics: latent centromeres and neocentromere formation

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Identification of a new, abundant superfamily of mammalian LTR-transposons

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

CENP-B binds a novel centromeric sequence in the Asian mouse Mus caroli

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Different central nervous system cell types display distinct and nonrandom arrangements of satellite DNA sequences

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Indications of centromere movement during interphase and differentiation

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Sequence organization and cytological localization of the minor satellite of mouse

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Curvature of mouse satellite DNA and condensation of heterochromatin.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Potential genetic functions of tandem repeated DNA sequence blocks in the human genome are based on a highly conserved "chromatin folding code".

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Basic local alignment search tool

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Differential distribution of long and short interspersed element sequences in the mouse genome: chromosome karyotyping by fluorescence in situ hybridization

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Mouse minor satellite DNA genetically maps to the centromere and is physically linked to the proximal telomere

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Small chromosomal regions position themselves autonomously according to their chromatin class.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Large tandem repeats make up the chromosome bar code: a hypothesis.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Genome organization and epigenetic marks in mouse germinal vesicle oocytes.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Long-term effects of prenatal stress on the characteristics of hippocampal neurons in rats with different excitability of the nervous systems.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

A strand-specific burst in transcription of pericentric satellites is required for chromocenter formation and early mouse development.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Nuclear topology of murine, cerebellar Purkinje neurons: changes as a function of development.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Active nucleolus organizers are precisely positioned in adult central nervous system cells but not in neuroectodermal tumor cells.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5819297

Mouse chromocenters contain associated telomeric DNA and telomerase activity

14 August 2018

1 reference

12 December 2020

Composition and evolution of the V2r vomeronasal receptor gene repertoire in mice and rats

1 reference

12 December 2020

High-resolution organization of mouse centromeric and pericentromeric DNA

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12 December 2020

A CR1 element is embedded in a novel tandem repeat (HinfI repeat) within the chicken genome

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12 December 2020

A new class of retroviral and satellite encoded small RNAs emanates from mammalian centromeres

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12 December 2020

Isolation of the constitutive heterochromatin from mouse liver nuclei

1 reference

12 December 2020

10.1186/S12864-018-4534-Z

Identifiers

DOI

1 reference

28 February 2018

Dimensions Publication ID

0 references

1 reference

28 February 2018

PubMed ID

29458329

1 reference

28 February 2018