(Q51351315)

4 April 2018

title

Motion of transfer RNA from the A/T state into the A-site using docking and simulations. (English)

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4 April 2018

2

Batsal Devkota

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author name string

Thomas Caulfield

series ordinal

1

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4 April 2018

Batsal Devkota

series ordinal

2

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4 April 2018

language of work or name

English

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publication date

28 July 2012

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4 April 2018

published in

Proteins

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4 April 2018

volume

80

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4 April 2018

issue

11

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4 April 2018

page(s)

2489-2500

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4 April 2018

Protein synthesis in salivary glands of Drosophila melanogaster: relation to chromosome puffs

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Toward an understanding of the structural basis of translation

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pH-sensitivity of the ribosomal peptidyl transfer reaction dependent on the identity of the A-site aminoacyl-tRNA.

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The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

21 January 2018

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21 January 2018

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The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution: a classic structure revisited

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tRNA selection and kinetic proofreading in translation

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Kinetic amplification of enzyme discrimination

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Recognition and selection of tRNA in translation

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Insights into the decoding mechanism from recent ribosome structures

21 January 2018

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Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy

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Normal mode based flexible fitting of high-resolution structure into low-resolution experimental data from cryo-EM.

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Flexible fitting of high-resolution x-ray structures into cryoelectron microscopy maps using biased molecular dynamics simulations

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Simulating movement of tRNA into the ribosome during decoding

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Examinations of tRNA Range of Motion Using Simulations of Cryo-EM Microscopy and X-Ray Data

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Increasing the precision of comparative models with YASARA NOVA-a self-parameterizing force field

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Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution

21 January 2018

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Structure of the 30S ribosomal subunit

21 January 2018

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Crystal structure of the ternary complex of Phe-tRNAPhe, EF-Tu, and a GTP analog

21 January 2018

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The crystal structure of Cys-tRNACys-EF-Tu-GDPNP reveals general and specific features in the ternary complex and in tRNA

21 January 2018

1 reference

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Crystal structure of a mutant elongation factor G trapped with a GTP analogue

21 January 2018

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X-ray crystallography study on ribosome recycling: the mechanism of binding and action of RRF on the 50S ribosomal subunit

21 January 2018

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Non-Watson-Crick basepairing and hydration in RNA motifs: molecular dynamics of 5S rRNA loop E.

21 January 2018

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Molecular dynamics simulations of sarcin-ricin rRNA motif.

21 January 2018

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Structure, dynamics, and elasticity of free 16s rRNA helix 44 studied by molecular dynamics simulations

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Comparison of simple potential functions for simulating liquid water

21 January 2018

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CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

21 January 2018

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Inter-ring rotation of apolipoprotein A-I protein monomers for the double-belt model using biased molecular dynamics

21 January 2018

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Structural insights into cognate versus near-cognate discrimination during decoding

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24131

Distortion of tRNA upon near-cognate codon recognition on the ribosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24131

GTPase activation of elongation factor EF-Tu by the ribosome during decoding

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24131

The ribosome uses two active mechanisms to unwind messenger RNA during translation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24131

Structural rearrangements of the ribosome at the tRNA proofreading step

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24131

21 January 2018

Identifiers

DOI

10.1002/PROT.24131

1 reference

4 April 2018

1 reference

4 April 2018