(Q51364776)

English

BAIUCAS: a novel BLAST-based algorithm for the identification of upstream open reading frames with conserved amino acid sequences and its application to the Arabidopsis thaliana genome.

scientific article published on 21 May 2012

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scholarly article

1 reference

Europe PubMed Central

4 April 2018

http://europepmc.org/abstract/MED/22618534

BAIUCAS: a novel BLAST-based algorithm for the identification of upstream open reading frames with conserved amino acid sequences and its application to the Arabidopsis thaliana genome. (English)

1 reference

Europe PubMed Central

4 April 2018

http://europepmc.org/abstract/MED/22618534

Arabidopsis thaliana

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3

1 reference

Europe PubMed Central

4 April 2018

http://europepmc.org/abstract/MED/22618534

object named as

Hiro Takahashi

1

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author name string

Anna Takahashi

2

1 reference

Europe PubMed Central

4 April 2018

http://europepmc.org/abstract/MED/22618534

Hitoshi Onouchi

4

1 reference

Europe PubMed Central

4 April 2018

http://europepmc.org/abstract/MED/22618534

language of work or name

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publication date

21 May 2012

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Europe PubMed Central

4 April 2018

http://europepmc.org/abstract/MED/22618534

number of pages

11

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based on heuristic

inferred from page(s)

1 reference

Europe PubMed Central

4 April 2018

http://europepmc.org/abstract/MED/22618534

28

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Europe PubMed Central

4 April 2018

http://europepmc.org/abstract/MED/22618534

17

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Europe PubMed Central

4 April 2018

http://europepmc.org/abstract/MED/22618534

2231-2241

1 reference

Europe PubMed Central

4 April 2018

http://europepmc.org/abstract/MED/22618534

Structural basis for translational stalling by human cytomegalovirus and fungal arginine attenuator peptide

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS303

21 January 2018

Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS303

21 January 2018

Evolutionary conservation suggests a regulatory function of AUG triplets in 5'-UTRs of eukaryotic genes

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS303

21 January 2018

Evidence for conservation and selection of upstream open reading frames suggests probable encoding of bioactive peptides

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS303

21 January 2018

Identification of putative regulatory upstream ORFs in the yeast genome using heuristics and evolutionary conservation.

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS303

21 January 2018

Physical evidence for distinct mechanisms of translational control by upstream open reading frames

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS303

21 January 2018

Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS303

21 January 2018

A dual upstream open reading frame-based autoregulatory circuit controlling polyamine-responsive translation

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS303

21 January 2018

Comparative genomic analysis of novel conserved peptide upstream open reading frames in Drosophila melanogaster and other dipteran species

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS303

21 January 2018

Identification of novel conserved peptide uORF homology groups in Arabidopsis and rice reveals ancient eukaryotic origin of select groups and preferential association with transcription factor-encoding genes

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS303

21 January 2018

Evolutionary roles of upstream open reading frames in mediating gene regulation in fungi

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS303

21 January 2018

uAUG and uORFs in human and rodent 5'untranslated mRNAs

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS303

21 January 2018

The dwarf phenotype of the Arabidopsis acl5 mutant is suppressed by a mutation in an upstream ORF of a bHLH gene

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS303

21 January 2018

uORFs with unusual translational start codons autoregulate expression of eukaryotic ornithine decarboxylase homologs

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS303

21 January 2018

Inhibition of CHOP translation by a peptide encoded by an open reading frame localized in the chop 5'UTR

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS303

21 January 2018

mRNA sequence features that contribute to translational regulation in Arabidopsis

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS303

21 January 2018

Unbiased estimation of the rates of synonymous and nonsynonymous substitution

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS303

21 January 2018

Control of eukaryotic protein synthesis by upstream open reading frames in the 5'-untranslated region of an mRNA

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS303

21 January 2018

Upstream open reading frames as regulators of mRNA translation

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS303

21 January 2018

Dual modes of natural selection on upstream open reading frames.

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS303

21 January 2018

Sucrose control of translation mediated by an upstream open reading frame-encoded peptide

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS303

21 January 2018

Presence of ATG triplets in 5' untranslated regions of eukaryotic cDNAs correlates with a 'weak' context of the start codon

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS303

21 January 2018

The upstream open reading frame of the mRNA encoding S-adenosylmethionine decarboxylase is a polyamine-responsive translational control element.

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS303

21 January 2018

Sequence requirements for ribosome stalling by the arginine attenuator peptide

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS303

21 January 2018

Posttranscriptional regulation by the upstream open reading frame of the phosphoethanolamine N-methyltransferase gene

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS303

21 January 2018

Conserved upstream open reading frames in higher plants

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS303

21 January 2018

Regulation of fungal gene expression via short open reading frames in the mRNA 5'untranslated region

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS303

21 January 2018

A conserved upstream open reading frame mediates sucrose-induced repression of translation

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS303

21 January 2018

Identification and characterization of upstream open reading frames (uORF) in the 5' untranslated regions (UTR) of genes in Saccharomyces cerevisiae.

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS303

21 January 2018

Identifiers

10.1093/BIOINFORMATICS/BTS303

1 reference

Europe PubMed Central

4 April 2018

http://europepmc.org/abstract/MED/22618534

DBLP publication ID

journals/bioinformatics/TakahashiTNO12

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

Europe PubMed Central

4 April 2018

http://europepmc.org/abstract/MED/22618534

ResearchGate publication ID

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