(Q51458644)

5 April 2018

title

Scoring optimisation of unbound protein-protein docking including protein binding site predictions. (English)

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2

Martin Zacharias

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Sebastian Schneider

1

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publication date

1 January 2012

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Journal of Molecular Recognition

published in

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volume

25

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issue

1

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page(s)

15-23

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Weighted geometric docking: incorporating external information in the rotation-translation scan

cites work

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Prediction of interface residues in protein-protein complexes by a consensus neural network method: test against NMR data

21 January 2018

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HADDOCK: a protein-protein docking approach based on biochemical or biophysical information

21 January 2018

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Binding site prediction and improved scoring during flexible protein-protein docking with ATTRACT.

21 January 2018

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A novel method for scoring of docked protein complexes using predicted protein-protein binding sites

21 January 2018

1 reference

Using protein binding site prediction to improve protein docking

21 January 2018

1 reference

Combining interface core and whole interface descriptors in postscan processing of protein-protein docking models

21 January 2018

1 reference

Docking and scoring protein complexes: CAPRI 3rd Edition

21 January 2018

1 reference

Consensus scoring for enriching near-native structures from protein-protein docking decoys

21 January 2018

1 reference

Protein binding site prediction using an empirical scoring function

21 January 2018

1 reference

Accounting for global protein deformability during protein-protein and protein-ligand docking

21 January 2018

1 reference

Energy minimization in low-frequency normal modes to efficiently allow for global flexibility during systematic protein-protein docking.

21 January 2018

1 reference

Data-driven Docking: Using External Information to Spark the Biomolecular Rendez-vous

21 January 2018

1 reference

Protein-Protein Docking Benchmark 2.0: an update

21 January 2018

1 reference

ProMate: a structure based prediction program to identify the location of protein-protein binding sites

21 January 2018

1 reference

ZRANK: reranking protein docking predictions with an optimized energy function.

21 January 2018

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A combination of rescoring and refinement significantly improves protein docking performance

21 January 2018

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Present and future challenges and limitations in protein-protein docking

21 January 2018

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meta-PPISP: a meta web server for protein-protein interaction site prediction.

21 January 2018

1 reference

How proteins get in touch: interface prediction in the study of biomolecular complexes.

21 January 2018

1 reference

CPORT: a consensus interface predictor and its performance in prediction-driven docking with HADDOCK.

21 January 2018

1 reference

Strengths and weaknesses of data-driven docking in critical assessment of prediction of interactions.

21 January 2018

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WHISCY: what information does surface conservation yield? Application to data-driven docking.

21 January 2018

1 reference

Protein-protein docking with a reduced protein model accounting for side-chain flexibility

21 January 2018

1 reference

Docking prediction using biological information, ZDOCK sampling technique, and clustering guided by the DFIRE statistical energy function.

21 January 2018

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Interaction-site prediction for protein complexes: a critical assessment

21 January 2018

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pyDock: electrostatics and desolvation for effective scoring of rigid-body protein-protein docking

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1002/JMR.1165

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