(Q51549686)

6 April 2018

title

Perspective: Mechanochemistry of biological and synthetic molecules. (English)

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6 April 2018

author name string

Dmitrii E Makarov

series ordinal

1

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6 April 2018

language of work or name

English

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publication date

1 January 2016

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6 April 2018

Journal of Chemical Physics

published in

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6 April 2018

volume

144

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6 April 2018

issue

3

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6 April 2018

page(s)

030901

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6 April 2018

Pulling geometry defines the mechanical resistance of a beta-sheet protein

cites work

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Simulation of the mechanical unfolding of ubiquitin: probing different unfolding reaction coordinates by changing the pulling geometry.

21 January 2018

1 reference

The force exerted by a molecular motor

21 January 2018

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Simple mechanochemistry describes the dynamics of kinesin molecules

21 January 2018

1 reference

Sacrificial bonds and hidden length: unraveling molecular mesostructures in tough materials

21 January 2018

1 reference

Computer simulations and theory of protein translocation.

21 January 2018

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Computational and theoretical insights into protein and peptide translocation

21 January 2018

1 reference

Protein unfolding--an important process in vivo?

21 January 2018

1 reference

Finding a protein's Achilles heel

21 January 2018

1 reference

Force-rate characterization of two spiropyran-based molecular force probes.

21 January 2018

1 reference

Molecular engineering of mechanophore activity for stress-responsive polymeric materials

21 January 2018

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Chemomechanics: chemical kinetics for multiscale phenomena.

21 January 2018

1 reference

DNA-based optomechanical molecular motor.

21 January 2018

1 reference

Single-molecule junctions beyond electronic transport

21 January 2018

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Probing the structural dynamics of proteins and nucleic acids with optical tweezers

21 January 2018

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Protein misfolding occurs by slow diffusion across multiple barriers in a rough energy landscape

21 January 2018

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Single-molecule force spectroscopy approach to enzyme catalysis

21 January 2018

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Perspective: Single polymer mechanics across the force regimes [corrected].

21 January 2018

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Nonlinear low-force elasticity of single-stranded DNA molecules.

21 January 2018

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Adhesion forces between individual ligand-receptor pairs

21 January 2018

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Force-induced melting of the DNA double helix 1. Thermodynamic analysis

21 January 2018

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Exploring the topography of the stress-modified energy landscapes of mechanosensitive molecules.

21 January 2018

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Models for the Specific Adhesion of Cells to Cells

21 January 2018

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Energy barrier scalings in driven systems

21 January 2018

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Reaction Coordinates and Pathways of Mechanochemical Transformations.

21 January 2018

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Beyond the conventional description of dynamic force spectroscopy of adhesion bonds

21 January 2018

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Fold Catastrophes and the Dependence of Free-Energy Barriers to Conformational Transitions on Applied Force

21 January 2018

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On the calculation of internal forces in mechanically stressed polyatomic molecules.

21 January 2018

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Reconstructing potential energy functions from simulated force-induced unbinding processes

21 January 2018

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Steered molecular dynamics and mechanical functions of proteins

21 January 2018

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Molecular dynamics study of unbinding of the avidin-biotin complex

21 January 2018

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Reaction-rate theory: fifty years after Kramers

21 January 2018

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Dynamics of unbinding of cell adhesion molecules: transition from catch to slip bonds

21 January 2018

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Theoretical aspects of the biological catch bond

21 January 2018

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Biomolecules under mechanical stress: a simple mechanism of complex behavior

21 January 2018

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Finding mechanochemical pathways and barriers without transition state search.

21 January 2018

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Mechanical unfolding of RNA hairpins

21 January 2018

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Forced-unfolding and force-quench refolding of RNA hairpins

21 January 2018

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Catch bond-like kinetics of helix cracking: network analysis by molecular dynamics and milestoning

21 January 2018

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Resolving the molecular mechanism of cadherin catch bond formation.

21 January 2018

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Pulling direction as a reaction coordinate for the mechanical unfolding of single molecules

21 January 2018

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Complex unfolding kinetics of single-domain proteins in the presence of force

21 January 2018

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Direct evidence of the multidimensionality of the free-energy landscapes of proteins revealed by mechanical probes.

21 January 2018

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Direct observation of a force-induced switch in the anisotropic mechanical unfolding pathway of a protein

21 January 2018

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Direct observation of catch bonds involving cell-adhesion molecules

21 January 2018

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Biomechanics of cell adhesion: how force regulates the lifetime of adhesive bonds at the single molecule level

21 January 2018

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Dynamic strength of molecular adhesion bonds

21 January 2018

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Strength of a weak bond connecting flexible polymer chains

21 January 2018

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Energy landscape distortions and the mechanical unfolding of proteins

21 January 2018

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Intrinsic rates and activation free energies from single-molecule pulling experiments.

21 January 2018

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Theory, analysis, and interpretation of single-molecule force spectroscopy experiments

21 January 2018

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Extracting kinetics from single-molecule force spectroscopy: nanopore unzipping of DNA hairpins

21 January 2018

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Unfolding of titin immunoglobulin domains by steered molecular dynamics simulation

21 January 2018

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Mechanical unfolding intermediates in titin modules.

21 January 2018

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Single-molecule experiments in vitro and in silico

21 January 2018

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First principles dynamics and minimum energy pathways for mechanochemical ring opening of cyclobutene

21 January 2018

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Mechanically triggered heterolytic unzipping of a low-ceiling-temperature polymer

21 January 2018

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Force-induced activation of covalent bonds in mechanoresponsive polymeric materials

21 January 2018

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Trapping a diradical transition state by mechanochemical polymer extension

21 January 2018

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Theoretical Approaches for Understanding the Interplay Between Stress and Chemical Reactivity

21 January 2018

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Force distribution analysis of mechanochemically reactive dimethylcyclobutene.

21 January 2018

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The Janus-faced role of external forces in mechanochemical disulfide bond cleavage.

21 January 2018

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Understanding covalent mechanochemistry.

21 January 2018

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Competition between Orbitals and Stress in Mechanochemistry

21 January 2018

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Structure-mechanochemical activity relationships for cyclobutane mechanophores

21 January 2018

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"Flex-activated" mechanophores: using polymer mechanochemistry to direct bond bending activation.

21 January 2018

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Isolated catalyst sites on amorphous supports: a systematic algorithm for understanding heterogeneities in structure and reactivity.

21 January 2018

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Comparison of the predictive performance of the Bell-Evans, Taylor-expansion and statistical-mechanics models of mechanochemistry

21 January 2018

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Communication: Newton homotopies for sampling stationary points of potential energy landscapes.

21 January 2018

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Reconstructing folding energy landscapes by single-molecule force spectroscopy

21 January 2018

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Free energy profiles from single-molecule pulling experiments

21 January 2018

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From mechanical folding trajectories to intrinsic energy landscapes of biopolymers.

21 January 2018

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Determining intrachain diffusion coefficients for biopolymer dynamics from single-molecule force spectroscopy measurements.

21 January 2018

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Communication: Does force spectroscopy of biomolecules probe their intrinsic dynamic properties?

21 January 2018

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Extracting intrinsic dynamic parameters of biomolecular folding from single-molecule force spectroscopy experiments

21 January 2018

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On artifacts in single-molecule force spectroscopy

21 January 2018

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Exploring the role of internal friction in the dynamics of unfolded proteins using simple polymer models

21 January 2018

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Interplay of non-Markov and internal friction effects in the barrier crossing kinetics of biopolymers: insights from an analytically solvable model

21 January 2018

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Ultrastable atomic force microscopy: improved force and positional stability.

21 January 2018

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Optimizing 1-μs-Resolution Single-Molecule Force Spectroscopy on a Commercial Atomic Force Microscope

21 January 2018

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Direct Observation of the Reversible Two-State Unfolding and Refolding of an α/β Protein by Single-Molecule Atomic Force Microscopy.

21 January 2018

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Atomic force microscopy with sub-picoNewton force stability for biological applications.

21 January 2018

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High-speed force spectroscopy unfolds titin at the velocity of molecular dynamics simulations.

21 January 2018

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Dynamics of equilibrium folding and unfolding transitions of titin immunoglobulin domain under constant forces.

21 January 2018

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Single-molecule fluorescence experiments determine protein folding transition path times

21 January 2018

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Testing Landscape Theory for Biomolecular Processes with Single Molecule Fluorescence Spectroscopy.

21 January 2018

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Energy landscape analysis of native folding of the prion protein yields the diffusion constant, transition path time, and rates

21 January 2018

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Dominant pathways in protein folding.

21 January 2018

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Shapes of dominant transition paths from single-molecule force spectroscopy.

21 January 2018

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The mean shape of transition and first-passage paths.

21 January 2018

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Multiple Probes are Required to Explore and Control the Rugged Energy Landscape of RNA Hairpins

21 January 2018

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Mechanochemistry: The Mechanical Activation of Covalent Bonds

21 January 2018

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Molecular mechanistic origin of the toughness of natural adhesives, fibres and composites

21 January 2018

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Pinpointing Mechanochemical Bond Rupture by Embedding the Mechanophore into a Macrocycle

21 January 2018

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Energy landscapes of receptor-ligand bonds explored with dynamic force spectroscopy

21 January 2018

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A density functional theory model of mechanically activated silyl ester hydrolysis

21 January 2018

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21 January 2018

Identifiers

DOI

10.1063/1.4939791

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6 April 2018

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6 April 2018