(Q39460391)

12 September 2017

Exploring the role of internal friction in the dynamics of unfolded proteins using simple polymer models (English)

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12 September 2017

Ryan R Cheng

1

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12 September 2017

Alexander T Hawk

series ordinal

2

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12 September 2017

Dmitrii E Makarov

series ordinal

3

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12 September 2017

language of work or name

English

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publication date

1 February 2013

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Journal of Chemical Physics

12 September 2017

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12 September 2017

138

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12 September 2017

7

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12 September 2017

074112

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The protein folding 'speed limit'.

12 September 2017

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The speed limit for protein folding measured by triplet-triplet energy transfer.

21 January 2018

1 reference

Measuring the rate of intramolecular contact formation in polypeptides

21 January 2018

1 reference

Effects of Chain Stiffness on the Dynamics of Loop Formation in Polypeptides. Appendix: Testing a 1-Dimensional Diffusion Model for Peptide Dynamics

21 January 2018

1 reference

Diffusion-limited contact formation in unfolded cytochrome c: estimating the maximum rate of protein folding

21 January 2018

1 reference

Molecular basis for the effect of urea and guanidinium chloride on the dynamics of unfolded polypeptide chains

21 January 2018

1 reference

End-to-end distance distributions and intrachain diffusion constants in unfolded polypeptide chains indicate intramolecular hydrogen bond formation

21 January 2018

1 reference

Protein folding studied by single-molecule FRET.

21 January 2018

1 reference

Kinetics of contact formation and end-to-end distance distributions of swollen disordered peptides

21 January 2018

1 reference

Quantifying internal friction in unfolded and intrinsically disordered proteins with single-molecule spectroscopy.

21 January 2018

1 reference

Extremely slow intramolecular diffusion in unfolded protein L

21 January 2018

1 reference

Ultrafast dynamics of protein collapse from single-molecule photon statistics.

21 January 2018

1 reference

Protein folding pathways from replica exchange simulations and a kinetic network model

21 January 2018

1 reference

Energy landscape analyses of disordered histone tails reveal special organization of their conformational dynamics

21 January 2018

1 reference

Toward a taxonomy of the denatured state: small angle scattering studies of unfolded proteins

21 January 2018

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Site-specific dimensions across a highly denatured protein; a single molecule study

21 January 2018

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How accurate are polymer models in the analysis of Förster resonance energy transfer experiments on proteins?

21 January 2018

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Collapse transition in proteins

21 January 2018

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Universality in the timescales of internal loop formation in unfolded proteins and single-stranded oligonucleotides

21 January 2018

1 reference

Spatiotemporal correlations in denatured proteins: The dependence of fluorescence resonance energy transfer (FRET)-derived protein reconfiguration times on the location of the FRET probes.

21 January 2018

1 reference

Failure of one-dimensional Smoluchowski diffusion models to describe the duration of conformational rearrangements in floppy, diffusive molecular systems: a case study of polymer cyclization.

21 January 2018

1 reference

Measuring internal friction of an ultrafast-folding protein

21 January 2018

1 reference

The role of solvent viscosity in the dynamics of protein conformational changes

21 January 2018

1 reference

Solvent viscosity and friction in protein folding dynamics

21 January 2018

1 reference

Experimental evidence for a frustrated energy landscape in a three-helix-bundle protein family

21 January 2018

1 reference

A limiting speed for protein folding at low solvent viscosity

21 January 2018

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Diffusion in a rough potential

21 January 2018

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Separating the effects of internal friction and transition state energy to explain the slow, frustrated folding of spectrin domains

21 January 2018

1 reference

Localizing internal friction along the reaction coordinate of protein folding by combining ensemble and single-molecule fluorescence spectroscopy

21 January 2018

1 reference

Rouse Model with Internal Friction: A Coarse Grained Framework for Single Biopolymer Dynamics

21 January 2018

1 reference

Entropy and barrier-controlled fluctuations determine conformational viscoelasticity of single biomolecules

21 January 2018

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Peptide chain dynamics in light and heavy water: zooming in on internal friction

21 January 2018

1 reference

Mapping protein collapse with single-molecule fluorescence and kinetic synchrotron radiation circular dichroism spectroscopy

21 January 2018

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From the Cover: Charge interactions can dominate the dimensions of intrinsically disordered proteins.

21 January 2018

1 reference

Single-molecule spectroscopy of the temperature-induced collapse of unfolded proteins

21 January 2018

1 reference

Protein folding, protein collapse, and tanford's transfer model: lessons from single-molecule FRET.

21 January 2018

1 reference

A fluorescence-based method for direct measurement of submicrosecond intramolecular contact formation in biopolymers: an exploratory study with polypeptides

21 January 2018

1 reference

Measurement of submicrosecond intramolecular contact formation in peptides at the single-molecule level

21 January 2018

1 reference

Two-dimensional fluorescence resonance energy transfer as a probe for protein folding: a theoretical study

21 January 2018

1 reference

Protein dynamics from single-molecule fluorescence intensity correlation functions

21 January 2018

1 reference

The length and viscosity dependence of end-to-end collision rates in single-stranded DNA

21 January 2018

1 reference

Effects of denaturants on the dynamics of loop formation in polypeptides

21 January 2018

1 reference

The topomer search model: A simple, quantitative theory of two-state protein folding kinetics

21 January 2018

1 reference

How the folding rate constant of simple, single-domain proteins depends on the number of native contacts

21 January 2018

1 reference

Determination of ultrafast protein folding rates from loop formation dynamics

21 January 2018

1 reference

Role of internal chain dynamics on the rupture kinetic of adhesive contacts.

21 January 2018

1 reference

Force-dependent hopping rates of RNA hairpins can be estimated from accurate measurement of the folding landscapes

21 January 2018

1 reference

Cyclization of a polymer: first-passage problem for a non-Markovian process.

21 January 2018

1 reference

The rate of intramolecular loop formation in DNA and polypeptides: the absence of the diffusion-controlled limit and fractional power-law viscosity dependence

21 January 2018

1 reference

Hydrogen-bond driven loop-closure kinetics in unfolded polypeptide chains

21 January 2018

1 reference

Local conformational dynamics in alpha-helices measured by fast triplet transfer

21 January 2018

1 reference

An unlocking/relocking barrier in conformational fluctuations of villin headpiece subdomain

21 January 2018

1 reference

Aggregation of α-synuclein is kinetically controlled by intramolecular diffusion

21 January 2018

1 reference

Slow unfolded-state structuring in Acyl-CoA binding protein folding revealed by simulation and experiment

21 January 2018

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Limited internal friction in the rate-limiting step of a two-state protein folding reaction

21 January 2018

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Kinetics of Loop Formation in Polymer Chains†

21 January 2018

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Diffusive Model of Protein Folding Dynamics with Kramers Turnover in Rate

21 January 2018

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Influence of local and residual structures on the scaling behavior and dimensions of unfolded proteins

21 January 2018

1 reference

Intramolecular Reaction Rates of Flexible Polymers. 1. Simulation Results and the Classical Theory

21 January 2018

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Intramolecular Reaction Rates of Flexible Polymers. 2. Comparison with the Renormalization Group Theory

21 January 2018

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Unfolded Protein and Peptide Dynamics Investigated with Single-Molecule FRET and Correlation Spectroscopy from Picoseconds to Seconds†

21 January 2018

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21 January 2018

Identifiers

DOI

10.1063/1.4792206

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12 September 2017

1 reference