(Q36445621)

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Localizing internal friction along the reaction coordinate of protein folding by combining ensemble and single-molecule fluorescence spectroscopy

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

Localizing internal friction along the reaction coordinate of protein folding by combining ensemble and single-molecule fluorescence spectroscopy (English)

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

protein folding

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fluorescence spectroscopy

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author name string

Alessandro Borgia

1

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

Beth G Wensley

2

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

Andrea Soranno

3

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

Daniel Nettels

4

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

Madeleine B Borgia

5

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

Armin Hoffmann

6

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

Shawn H Pfeil

7

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

Everett A Lipman

8

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

Jane Clarke

9

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

Benjamin Schuler

10

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

language of work or name

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publication date

1 January 2012

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

Nature Communications

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Europe PubMed Central

PMC publication ID

14 August 2017

3

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

1195

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

https://scigraph.springernature.com/pub.10.1038/ncomms2204

0 references

Polymer scaling laws of unfolded and intrinsically disordered proteins quantified with single-molecule spectroscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

Energy landscape analysis of native folding of the prion protein yields the diffusion constant, transition path time, and rates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

Separating the effects of internal friction and transition state energy to explain the slow, frustrated folding of spectrin domains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

Quantifying internal friction in unfolded and intrinsically disordered proteins with single-molecule spectroscopy.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

Single-molecule fluorescence experiments determine protein folding transition path times

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

Diffusion models of protein folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

Atomic-level characterization of the structural dynamics of proteins

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

Single-molecule spectroscopy of protein folding in a chaperonin cage.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

Coordinate and time-dependent diffusion dynamics in protein folding.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

Theoretical perspectives on protein folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

Experimental evidence for a frustrated energy landscape in a three-helix-bundle protein family

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

Coordinate-dependent diffusion in protein folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

Protein dynamics from single-molecule fluorescence intensity correlation functions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

Dynamics of one-state downhill protein folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

Collapse transition in proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

Measuring internal friction of an ultrafast-folding protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

Diffusive reaction dynamics on invariant free energy profiles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

The protein folding problem

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

Protein folding studied by single-molecule FRET.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

Configuration-dependent diffusion can shift the kinetic transition state and barrier height of protein folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

Ultrafast dynamics of protein collapse from single-molecule photon statistics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

Characterizing the unfolded states of proteins using single-molecule FRET spectroscopy and molecular simulations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

Mapping protein collapse with single-molecule fluorescence and kinetic synchrotron radiation circular dichroism spectroscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

Protein folding is slaved to solvent motions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

Coil-globule transition in the denatured state of a small protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

Protein folding thermodynamics and dynamics: where physics, chemistry, and biology meet

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

How well can simulation predict protein folding kinetics and thermodynamics?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

Evidence for sequential barriers and obligatory intermediates in apparent two-state protein folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

Probing the free-energy surface for protein folding with single-molecule fluorescence spectroscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

Structural changes in the transition state of protein folding: alternative interpretations of curved chevron plots

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

Limited internal friction in the rate-limiting step of a two-state protein folding reaction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

Theory of protein folding: the energy landscape perspective

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

Diffusion in a rough potential

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

Role of diffusion in the folding of the alpha subunit of tryptophan synthase from Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

30 September 2017

The role of solvent viscosity in the dynamics of protein conformational changes

1 reference

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30 September 2017

Protein folding: adding a nucleus to guide helix docking reduces landscape roughness

1 reference

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28 June 2018

Distinguishing between smooth and rough free energy barriers in protein folding.

1 reference

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28 June 2018

Spectrin R16: broad energy barrier or sequential transition states?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3514500

28 June 2018

Peptide chain dynamics in light and heavy water: zooming in on internal friction

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A microfluidic mixing system for single-molecule measurements

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The folding pathway of spectrin R17 from experiment and simulation: using experimentally validated MD simulations to characterize States hinted at by experiment

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21 September 2018

The folding of spectrin domains II: phi-value analysis of R16.

1 reference

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21 September 2018

The folding of spectrin domains I: wild-type domains have the same stability but very different kinetic properties.

1 reference

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A limiting speed for protein folding at low solvent viscosity

1 reference

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Specific nucleus as the transition state for protein folding: evidence from the lattice model.

1 reference

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Diffusive Model of Protein Folding Dynamics with Kramers Turnover in Rate

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https://pubmed.ncbi.nlm.nih.gov/23149740

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Identifiers

10.1038/NCOMMS2204

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

2012NatCo...3.1195B

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Dimensions Publication ID

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PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 August 2017

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