(Q36221715)

12 August 2017

Energy landscape analysis of native folding of the prion protein yields the diffusion constant, transition path time, and rates (English)

1 reference

12 August 2017

0 references

0 references

1 reference

Hao Yu

1

0 references

author name string

Amar Nath Gupta

2

1 reference

12 August 2017

Xia Liu

3

1 reference

12 August 2017

Krishna Neupane

4

1 reference

12 August 2017

Angela M Brigley

5

1 reference

12 August 2017

Iveta Sosova

6

1 reference

12 August 2017

Michael T Woodside

7

1 reference

12 August 2017

language of work or name

English

0 references

publication date

20 August 2012

1 reference

12 August 2017

6

1 reference

Proceedings of the National Academy of Sciences of the United States of America

inferred from page(s)

published in

1 reference

12 August 2017

109

1 reference

12 August 2017

36

1 reference

12 August 2017

14452-14457

1 reference

Direct observation of multiple misfolding pathways in a single prion protein molecule

12 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

Single-molecule fluorescence experiments determine protein folding transition path times

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

The molten globule state is unusually deformable under mechanical force.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

Direct quantification of the attempt frequency determining the mechanical unfolding of ubiquitin protein

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

Single-molecule force spectroscopy of the add adenine riboswitch relates folding to regulatory mechanism

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

Atomic-level characterization of the structural dynamics of proteins

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

Extremely slow intramolecular diffusion in unfolded protein L

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

Theoretical perspectives on protein folding

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

Full distance-resolved folding energy landscape of one single protein molecule

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

Coordinate-dependent diffusion in protein folding

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

Differential stability of the bovine prion protein upon urea unfolding

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

Experimental determination of upper bound for transition path times in protein folding from single-molecule photon-by-photon trajectories

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

Folding kinetics of the human prion protein probed by temperature jump.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

Getting a grip on prions: oligomers, amyloids, and pathological membrane interactions

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

Ligand-dependent equilibrium fluctuations of single calmodulin molecules

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

Theory, analysis, and interpretation of single-molecule force spectroscopy experiments

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

Single-molecule studies of protein folding.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

Ultrafast dynamics of protein collapse from single-molecule photon statistics.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

Direct measurement of the full, sequence-dependent folding landscape of a nucleic acid

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

The experimental survey of protein-folding energy landscapes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

Nanomechanical measurements of the sequence-dependent folding landscapes of single nucleic acid hairpins

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

Exploring the energy landscape of GFP by single-molecule mechanical experiments

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

The protein folding 'speed limit'.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

Kinetics from nonequilibrium single-molecule pulling experiments

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

Understanding protein folding with energy landscape theory. Part I: Basic concepts

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

Free energy reconstruction from nonequilibrium single-molecule pulling experiments

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

Measuring the rate of intramolecular contact formation in polypeptides

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

A surprising simplicity to protein folding.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

Mechanical and chemical unfolding of a single protein: a comparison

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

Solution structure of a 142-residue recombinant prion protein corresponding to the infectious fragment of the scrapie isoform

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

Diffusion-limited contact formation in unfolded cytochrome c: estimating the maximum rate of protein folding

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

Models for the Specific Adhesion of Cells to Cells

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

Contact order revisited: influence of protein size on the folding rate

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3437844

Reaction-rate theory: fifty years after Kramers

29 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1206190109

A harmonic transition state approximation for the duration of reactive events in complex molecular rearrangements

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1206190109

From transition paths to transition states and rate coefficients.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1206190109

Intrinsic rates and activation free energies from single-molecule pulling experiments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1206190109

Dynamics of unfolded polypeptide chains as model for the earliest steps in protein folding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1206190109

Conformational properties of unfolded HypF-N.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1206190109

Signal-pair correlation analysis of single-molecule trajectories.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1206190109

Passive all-optical force clamp for high-resolution laser trapping.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1206190109

Locating the Barrier for Folding of Single Molecules under an External Force

21 January 2018

1 reference

12 December 2020

Reversible unfolding of individual titin immunoglobulin domains by AFM

1 reference

12 December 2020

Experimental free energy surface reconstruction from single-molecule force spectroscopy using Jarzynski's equality

1 reference

12 December 2020

Extremely rapid folding of the C-terminal domain of the prion protein without kinetic intermediates

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.1206190109

1 reference

release_kh7sxk57jjaypipgdzfgjakstq

12 August 2017

0 references

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/kh7sxk57jjaypipgdzfgjakstq

24 November 2022

mapped directly with Wikidata item

1 reference

12 August 2017

PubMed publication ID

22908253

1 reference