(Q51557644)

7 April 2018

title

PICS: probabilistic inference for ChIP-seq. (English)

1 reference

7 April 2018

Xuekui Zhang

1

0 references

Steven Jones

object named as

Steven Jones

6

0 references

Raphael Gottardo

7

object named as

Raphael Gottardo

1 reference

7 April 2018

author name string

Gordon Robertson

2

1 reference

7 April 2018

Martin Krzywinski

3

1 reference

7 April 2018

Kaida Ning

4

1 reference

7 April 2018

Arnaud Droit

5

1 reference

7 April 2018

language of work or name

English

0 references

publication date

1 March 2011

1 reference

7 April 2018

published in

Biometrics

1 reference

7 April 2018

volume

67

1 reference

7 April 2018

issue

1

1 reference

7 April 2018

page(s)

151-163

1 reference

7 April 2018

maintained by WikiProject

WikiProject Mathematics

0 references

cites work

Combining Mixture Components for Clustering

1 reference

https://api.crossref.org/works/10.1111%2FJ.1541-0420.2010.01441.X

ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1541-0420.2010.01441.X

Estrogens and progesterone promote persistent CCND1 gene activation during G1 by inducing transcriptional derepression via c-Jun/c-Fos/estrogen receptor (progesterone receptor) complex assembly to a distal regulatory element and recruitment of cycli

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1541-0420.2010.01441.X

What are DNA sequence motifs?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1541-0420.2010.01441.X

A cell-type-specific transcriptional network required for estrogen regulation of cyclin D1 and cell cycle progression in breast cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1541-0420.2010.01441.X

FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1541-0420.2010.01441.X

Bioconductor: open software development for computational biology and bioinformatics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1541-0420.2010.01441.X

A flexible and powerful bayesian hierarchical model for ChIP-Chip experiments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1541-0420.2010.01441.X

The new paradigm of flow cell sequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1541-0420.2010.01441.X

R: A Language for Data Analysis and Graphics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1541-0420.2010.01441.X

An integrated software system for analyzing ChIP-chip and ChIP-seq data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1541-0420.2010.01441.X

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1541-0420.2010.01441.X

Model-based analysis of tiling-arrays for ChIP-chip.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1541-0420.2010.01441.X

Design and analysis of ChIP-seq experiments for DNA-binding proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1541-0420.2010.01441.X

The UCSC Genome Browser Database: update 2009

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1541-0420.2010.01441.X

Fast and accurate short read alignment with Burrows-Wheeler transform

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1541-0420.2010.01441.X

GADEM: a genetic algorithm guided formation of spaced dyads coupled with an EM algorithm for motif discovery

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1541-0420.2010.01441.X

Automated gating of flow cytometry data via robust model-based clustering

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1541-0420.2010.01441.X

FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1541-0420.2010.01441.X

DNA familial binding profiles made easy: comparison of various motif alignment and clustering strategies

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1541-0420.2010.01441.X

Fitting mixture models to grouped and truncated data via the EM algorithm

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1541-0420.2010.01441.X

The Fos family of transcription factors and their role in tumourigenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1541-0420.2010.01441.X

Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1541-0420.2010.01441.X

ChIP-seq: advantages and challenges of a maturing technology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1541-0420.2010.01441.X

Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1541-0420.2010.01441.X

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1541-0420.2010.01441.X

Estimating the Dimension of a Model

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1541-0420.2010.01441.X

Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1541-0420.2010.01441.X

Model-based analysis of ChIP-Seq (MACS)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1541-0420.2010.01441.X

Robust Statistical Modeling Using the t Distribution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1541-0420.2010.01441.X

10.1111/J.1541-0420.2010.01441.X

21 January 2018

Identifiers

DOI

1 reference

7 April 2018

1 reference

1 reference

7 April 2018